JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATAD3B_chr1_1466765_1502848	0/0	c0015	1947	2	0	0	1	1	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0016	1947	2	1	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0017	1947	2	0	0	2	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0018	1947	2	0	0	0	0	2	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0019	1947	2	0	0	0	2	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0020	1947	2	0	2	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0021	1947	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0022	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0023	1947	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0024	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0025	1947	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0026	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0027	1947	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0028	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0029	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0030	1947	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0031	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0032	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0033	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0034	1947	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0035	1947	1	0	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0036	1947	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0037	1904	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0038	1947	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0039	1947	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	c0040	1947	1	0	0	0	1	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3C_chr1_1444689_1475163	0/0	c0001	1236	114	22	9	73	0	10	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0002	1236	108	8	28	59	3	10	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	1/1	c0003	1236	55	5	20	2	9	17	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0004	1236	43	10	2	28	0	3	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0005	1236	7	4	1	0	2	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0006	1236	6	4	0	2	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0007	1236	4	0	0	4	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0008	1236	4	4	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0009	1236	4	4	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0010	1236	4	4	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0011	1236	3	0	0	3	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0012	1236	3	3	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0013	1236	3	0	0	3	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0014	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0015	1236	2	0	1	0	1	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0016	1236	2	1	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0017	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0018	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0019	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0020	1236	2	0	2	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0021	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0022	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0023	1236	2	2	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0024	1236	2	0	0	0	2	0	copy fasta	ATAD3C	chr1	1444689	1475163