JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
ROS1_chr6_117282353_117430942	0/0	c0037	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0038	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0039	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0040	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0041	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0042	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0043	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0044	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0045	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0046	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0047	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0048	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0049	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0050	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0051	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0052	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0053	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0054	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0055	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0056	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0057	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0058	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0059	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0060	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0061	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0062	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0063	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0064	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0065	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0066	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0067	7026	1	0	0	0	1	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0068	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0069	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0070	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0071	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0072	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0073	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0074	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0075	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0076	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0077	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0078	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0079	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0080	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0081	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0082	7026	1	1	0	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0083	7026	1	0	1	0	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0084	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0085	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942
ROS1_chr6_117282353_117430942	0/0	c0086	7026	1	0	0	1	0	copy fasta	ROS1	chr6	117282353	117430942