JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/0	c0001	7254	29	0	4	22	1	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0002	7203	24	0	8	12	1	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0003	7251	16	0	7	1	3	5	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0004	7395	14	0	1	12	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0005	7299	13	1	3	9	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0006	7254	9	0	0	9	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0007	7203	9	9	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0008	7203	7	0	0	7	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0009	7251	7	7	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0010	7155	6	0	0	6	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0011	7395	6	0	5	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0012	7251	5	0	4	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0013	7299	5	0	4	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0014	6573	4	0	0	4	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0015	7203	4	0	0	4	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0016	7251	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0017	7251	3	0	0	2	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0018	7251	3	1	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0019	7254	3	0	1	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/1	c0020	7395	3	0	1	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0021	7203	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0022	7347	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0023	7347	3	1	1	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0024	7395	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0025	7134	3	0	0	0	0	3	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0026	7254	3	0	0	0	2	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0027	7206	3	0	3	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0028	7443	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0029	7347	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0030	7353	3	3	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0031	7300	3	0	0	3	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0032	7203	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0033	7251	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0034	7302	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0035	7203	2	0	1	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0036	7251	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0037	7299	2	0	0	0	2	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0038	7251	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0039	7347	2	0	2	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0040	7203	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0041	7203	2	0	0	1	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0042	7203	2	0	0	1	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0043	7203	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0044	7230	2	0	1	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0045	7182	2	0	0	0	0	2	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0046	7254	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0047	7203	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0048	7395	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0049	7155	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0050	7395	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143