JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/0	c0051	7203	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0052	7203	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0053	7203	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0054	7251	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0055	7203	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0056	7251	2	2	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0057	7396	2	0	0	2	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0058	7230	1	0	0	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0059	7251	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0060	7251	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0061	7299	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0062	7443	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0063	7203	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0064	7230	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0065	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0066	7395	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0067	7299	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0068	7251	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0069	7251	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0070	7251	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0071	7251	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	1/0	c0072	7203	1	0	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0073	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0074	7203	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0075	7395	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0076	7155	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0077	7203	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0078	7302	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0079	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0080	7254	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0081	7587	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0082	7587	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0083	7443	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0084	7443	1	0	0	0	1	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0085	7347	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0086	7347	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0087	7350	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0088	7251	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0089	7395	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0090	7203	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0091	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0092	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0093	7203	1	0	0	0	0	1	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0094	7251	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0095	7203	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0096	7395	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0097	7230	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0098	7230	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0099	7230	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0100	7203	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143