JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RP1L1_chr8_10601349_10660143	0/0	c0201	7350	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0202	7254	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0203	7401	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0204	7401	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0205	7347	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0206	7299	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0207	7203	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0208	7204	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0209	6574	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0210	7446	1	1	0	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0211	7203	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0212	7299	1	0	1	0	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1L1_chr8_10601349_10660143	0/0	c0213	7395	1	0	0	1	0	0	copy fasta	RP1L1	chr8	10601349	10660143
RP1_chr8_54611096_54635834	1/1	c0001	6471	186	47	28	88	5	16	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0002	6471	124	3	24	79	3	15	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0003	6471	69	13	18	22	5	11	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0004	6471	7	4	3	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0005	6471	6	0	0	6	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0006	6471	6	6	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0007	6471	3	3	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0008	6471	3	2	1	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0009	6471	3	1	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0010	6471	2	0	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0011	6471	2	0	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0012	6471	2	0	2	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0013	6471	2	0	1	0	0	1	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0014	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0015	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0016	6471	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0017	6471	1	0	0	0	0	1	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0018	6823	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0019	6471	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0020	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0021	6471	1	0	1	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0022	6471	1	0	0	0	1	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0023	6471	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0024	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0025	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0026	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0027	6471	1	1	0	0	0	0	copy fasta	RP1	chr8	54611096	54635834
RP1_chr8_54611096_54635834	0/0	c0028	6471	1	0	0	1	0	0	copy fasta	RP1	chr8	54611096	54635834
RP2_chrX_46832043_46887358	1/1	c0001	1053	268	74	45	114	10	23	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	c0002	1053	2	0	0	0	1	1	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	c0003	1053	1	1	0	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	c0004	1053	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	RP2	chrX	46832043	46887358
RP2_chrX_46832043_46887358	0/0	c0006	1060	1	0	0	1	0	0	copy fasta	RP2	chrX	46832043	46887358
RP9_chr7_33089797_33114404	1/0	c0001	666	352	89	60	160	10	32	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/1	c0002	666	86	1	16	50	4	14	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	c0003	666	2	2	0	0	0	0	copy fasta	RP9	chr7	33089797	33114404