JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RP9_chr7_33089797_33114404	0/0	c0004	666	1	0	0	0	0	1	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	c0005	666	1	1	0	0	0	0	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	c0006	666	1	0	0	0	0	1	copy fasta	RP9	chr7	33089797	33114404
RP9_chr7_33089797_33114404	0/0	c0007	666	1	1	0	0	0	0	copy fasta	RP9	chr7	33089797	33114404
RPA1_chr17_1825005_1905082	0/1	c0001	1851	126	42	24	37	8	14	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	1/0	c0002	1851	77	4	14	49	1	8	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0003	1851	70	11	12	39	3	5	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0004	1851	62	20	11	24	1	6	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0005	1851	30	9	6	12	0	3	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0006	1851	22	2	8	10	1	1	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0007	1851	6	6	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0008	1851	2	0	0	2	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0009	1851	2	0	1	0	0	1	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0010	1851	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0011	1851	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0012	1851	1	1	0	0	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0013	1851	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA1_chr17_1825005_1905082	0/0	c0014	1851	1	0	0	1	0	0	copy fasta	RPA1	chr17	1825005	1905082
RPA2_chr1_27886524_27919575	1/1	c0001	813	359	85	76	132	18	46	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	c0002	813	3	3	0	0	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA2_chr1_27886524_27919575	0/0	c0003	813	2	0	0	2	0	0	copy fasta	RPA2	chr1	27886524	27919575
RPA3_chr7_7631518_7723607	1/1	c0001	366	308	86	60	112	8	40	copy fasta	RPA3	chr7	7631518	7723607
RPA4_chrX_96878908_96890467	1/1	c0001	786	160	22	31	70	9	26	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	c0002	786	155	53	21	75	4	2	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	c0003	786	3	2	1	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPA4_chrX_96878908_96890467	0/0	c0004	786	1	1	0	0	0	0	copy fasta	RPA4	chrX	96878908	96890467
RPAIN_chr17_5415182_5437877	1/1	c0001	660	195	71	47	46	6	23	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0002	660	194	18	31	120	5	20	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0003	660	3	3	0	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0004	660	3	0	0	1	1	1	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0005	660	2	0	2	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0006	660	2	0	2	0	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAIN_chr17_5415182_5437877	0/0	c0007	660	1	0	0	1	0	0	copy fasta	RPAIN	chr17	5415182	5437877
RPAP1_chr15_41512176_41549257	0/0	c0001	4182	116	10	25	62	3	16	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/1	c0002	4182	82	14	28	29	4	6	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0003	4182	60	12	2	44	0	2	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0004	4182	35	0	3	27	1	4	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0005	4182	23	22	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0006	4182	14	0	4	7	2	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0007	4182	14	14	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0008	4182	11	2	5	0	4	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0009	4182	10	0	0	9	0	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0010	4182	6	3	0	0	0	3	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0011	4182	5	3	2	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0012	4182	5	5	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0013	4182	4	0	0	2	0	2	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0014	4182	3	0	0	3	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0015	4182	3	0	3	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0016	4182	2	2	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0017	4182	2	0	0	0	0	2	copy fasta	RPAP1	chr15	41512176	41549257