JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPAP1_chr15_41512176_41549257	0/0	c0018	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0019	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0020	4182	1	0	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0021	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0022	4182	1	0	0	0	0	1	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0023	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0024	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0025	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0026	4182	1	0	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	1/0	c0027	4182	1	0	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0028	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0029	4182	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0030	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0031	4182	1	0	0	1	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0032	4182	1	0	1	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0033	4182	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0034	4182	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0035	4182	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP1_chr15_41512176_41549257	0/0	c0036	4182	1	1	0	0	0	0	copy fasta	RPAP1	chr15	41512176	41549257
RPAP2_chr1_92294059_92407056	0/0	c0001	7978	55	15	13	10	6	11	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/1	c0002	7978	34	1	15	8	1	8	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0003	7981	9	9	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0004	7980	8	8	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0005	7979	7	4	3	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0006	7979	6	6	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0007	7978	6	0	3	3	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0008	7977	6	0	2	1	3	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0009	7980	4	4	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0010	7978	4	0	4	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0011	7979	4	3	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0012	7978	3	0	3	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0013	7976	3	3	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0014	7976	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0015	7977	2	0	1	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0016	7979	2	0	2	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0017	7977	2	1	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0018	7978	2	0	0	2	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0019	7978	2	0	0	0	0	2	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0020	7978	2	2	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0021	7978	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0022	7978	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0023	7979	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0024	7980	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0025	7981	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0026	7977	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0027	7979	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0028	7819	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0029	7978	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0030	7978	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0031	7978	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056