JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPAP2_chr1_92294059_92407056	0/0	c0032	7978	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0033	7977	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0034	7978	1	0	0	0	0	1	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0035	7978	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0036	7978	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0037	7978	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0038	7978	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0039	7978	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0040	7978	1	0	0	1	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0041	7979	1	0	1	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0042	7979	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	1/0	c0043	7976	1	0	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0044	7977	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0045	7979	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0046	7979	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0047	7975	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0048	7977	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP2_chr1_92294059_92407056	0/0	c0049	7975	1	1	0	0	0	0	copy fasta	RPAP2	chr1	92294059	92407056
RPAP3_chr12_47656249_47711030	1/1	c0001	1998	386	77	67	187	12	41	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0002	1998	17	13	4	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0003	1998	3	0	1	0	1	1	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0004	1998	2	0	0	0	2	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0005	1998	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0006	1998	1	0	0	1	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0007	1998	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0008	1998	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0009	2243	1	0	0	0	1	0	copy fasta	RPAP3	chr12	47656249	47711030
RPAP3_chr12_47656249_47711030	0/0	c0010	1998	1	1	0	0	0	0	copy fasta	RPAP3	chr12	47656249	47711030
RPE65_chr1_68423822_68454954	1/1	c0001	1602	314	65	53	147	13	34	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0002	1602	100	8	20	60	4	8	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0003	1602	12	11	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0004	1602	3	3	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0005	1602	3	3	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0006	1602	3	3	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0007	1602	2	0	0	2	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0008	1602	2	2	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0009	1602	2	0	0	0	0	2	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0010	1602	2	2	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0011	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0012	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0013	1602	1	0	0	0	0	1	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0014	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0015	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0016	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0017	1602	1	1	0	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0018	1602	1	0	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0019	1602	1	0	0	0	1	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0020	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0021	1602	1	0	1	0	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPE65_chr1_68423822_68454954	0/0	c0022	1602	1	0	0	0	0	1	copy fasta	RPE65	chr1	68423822	68454954