JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPE65_chr1_68423822_68454954	0/0	c0023	1602	1	0	0	1	0	0	copy fasta	RPE65	chr1	68423822	68454954
RPEL1_chr10_103240887_103253016	1/0	c0001	687	368	92	67	152	18	38	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	c0002	687	4	0	4	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	c0003	687	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	c0004	687	1	0	0	1	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPEL1_chr10_103240887_103253016	0/0	c0005	687	1	0	1	0	0	0	copy fasta	RPEL1	chr10	103240887	103253016
RPE_chr2_209997638_210027260	1/1	c0001	687	370	84	66	168	16	34	copy fasta	RPE	chr2	209997638	210027260
RPF1_chr1_84474266_84503352	1/0	c0001	1050	174	54	30	67	4	18	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/1	c0002	1050	143	16	26	79	4	17	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0003	1050	21	11	6	0	1	3	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0004	1050	4	4	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0005	1050	3	0	0	0	1	2	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0006	1050	2	2	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0007	1050	1	0	1	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF1_chr1_84474266_84503352	0/0	c0009	1050	1	0	1	0	0	0	copy fasta	RPF1	chr1	84474266	84503352
RPF2_chr6_110977038_111033263	1/1	c0001	921	343	61	65	159	10	46	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0002	921	6	5	1	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0003	921	4	4	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0004	921	2	2	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0005	921	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0006	921	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0007	921	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0008	921	1	1	0	0	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPF2_chr6_110977038_111033263	0/0	c0009	921	1	0	0	1	0	0	copy fasta	RPF2	chr6	110977038	111033263
RPGRIP1L_chr16_53593153_53708859	1/0	c0001	3948	157	33	42	63	5	13	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0002	3948	55	0	4	47	2	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/1	c0003	3948	42	7	3	23	2	6	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0004	3948	30	0	0	25	0	5	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0005	3948	21	21	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0006	3948	16	11	0	0	0	5	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0007	3948	13	4	0	8	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0008	3948	5	4	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0009	3948	3	0	0	0	0	3	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0010	3948	3	0	2	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0011	3948	3	3	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0012	3948	2	0	0	2	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0013	3948	2	0	0	0	0	2	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0014	3948	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0015	3948	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0016	3948	1	0	1	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0017	3948	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0018	3948	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0019	3948	1	1	0	0	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0020	3948	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0021	3948	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0022	3948	1	0	0	0	1	0	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0023	3948	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0024	3948	1	0	0	0	0	1	copy fasta	RPGRIP1L	chr16	53593153	53708859
RPGRIP1L_chr16_53593153_53708859	0/0	c0025	3948	1	0	0	1	0	0	copy fasta	RPGRIP1L	chr16	53593153	53708859