JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATAD3C_chr1_1444689_1475163	0/0	c0025	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0026	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0027	1236	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0028	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0029	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0030	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0031	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0032	1236	1	0	0	0	1	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0033	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0034	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0035	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0036	1236	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0037	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0038	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0039	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0040	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0041	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0042	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0043	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0044	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0045	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0046	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0047	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0048	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0049	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0050	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0051	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0052	1236	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0053	1236	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	c0054	1236	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD5_chr17_30826966_30900869	1/0	c0001	5535	123	21	27	56	6	12	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0002	5529	62	7	11	35	0	9	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0003	5535	30	22	8	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/1	c0004	5535	30	6	14	0	6	3	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0005	5535	13	13	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0006	5535	8	8	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0007	5535	4	0	0	0	0	4	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0008	5535	3	3	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0009	5535	2	1	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0010	5535	2	0	2	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0011	5535	1	1	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0012	5529	1	0	0	0	0	1	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0013	5535	1	0	0	0	0	1	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0014	5556	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0015	5535	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0016	5535	1	1	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0017	5535	1	0	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0018	5535	1	1	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	c0019	5529	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAT1_chr6_30621874_30651821	0/1	c0001	1266	364	77	64	162	16	44	copy fasta	ATAT1	chr6	30621874	30651821