JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPGRIP1_chr14_21275083_21356301	1/0	c0001	3861	105	21	14	54	5	10	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0002	3861	52	1	9	32	1	9	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0003	3861	35	15	6	9	1	4	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/1	c0004	3861	30	5	8	11	2	3	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0005	3861	16	13	2	0	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0006	3861	12	2	8	1	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0007	3861	12	0	0	12	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0008	3861	8	1	2	0	1	4	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0009	3861	4	4	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0010	3861	4	0	0	3	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0011	3861	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0012	3861	3	0	0	1	0	2	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0013	3861	3	0	0	0	1	2	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0014	3861	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0015	3861	3	0	0	1	0	2	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0016	3861	3	3	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0017	3861	3	1	2	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0018	3861	2	0	2	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0019	3861	2	2	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0020	3861	2	0	0	2	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0021	3861	1	0	0	0	1	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0022	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0023	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0024	3861	1	0	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0025	3861	1	0	0	1	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0026	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0027	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0028	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0029	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0030	3861	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0031	3861	1	0	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0032	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0033	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0034	3861	1	0	0	1	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0035	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0036	3861	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0037	3861	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0038	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0039	3861	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0040	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0041	3861	1	0	0	0	0	1	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0042	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0043	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0044	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0045	3861	1	0	1	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0046	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGRIP1_chr14_21275083_21356301	0/0	c0047	3861	1	1	0	0	0	0	copy fasta	RPGRIP1	chr14	21275083	21356301
RPGR_chrX_38279408_38332509	1/1	c0001	3459	91	20	15	36	4	14	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0002	3480	69	0	9	51	1	8	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0003	3480	29	9	0	19	0	1	copy fasta	RPGR	chrX	38279408	38332509