JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPGR_chrX_38279408_38332509	0/0	c0004	3459	24	9	3	7	1	4	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0005	3459	13	2	7	0	3	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0006	3456	8	4	3	0	1	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0007	3447	8	0	4	0	2	2	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0008	3456	6	0	6	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0009	3459	6	6	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0010	3459	5	4	1	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0011	3444	4	0	4	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0012	3459	4	3	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0013	3579	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0014	3486	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0015	3477	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0016	3504	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0017	3435	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0018	3459	2	0	0	2	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0019	3459	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0020	3459	2	2	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0021	3482	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0022	3459	1	0	1	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0023	3459	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0024	3435	1	0	1	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0025	3429	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0026	3456	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0027	3456	1	0	0	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0028	3546	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0029	3453	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0030	3480	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0031	3456	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0032	3478	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0033	3480	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0034	3483	1	0	0	0	0	1	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0035	3459	1	0	0	0	1	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0036	3480	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0037	3458	1	0	0	1	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0038	3464	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPGR_chrX_38279408_38332509	0/0	c0039	3471	1	1	0	0	0	0	copy fasta	RPGR	chrX	38279408	38332509
RPH3AL_chr17_207389_357807	0/1	c0001	948	95	20	18	40	11	5	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0002	948	12	4	3	1	0	4	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0003	948	7	5	2	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0004	948	7	0	0	7	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0005	948	2	0	0	0	0	2	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0006	948	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0007	948	1	0	0	0	0	1	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0008	948	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0009	948	1	0	1	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0010	948	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0011	948	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0012	948	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0013	948	1	0	0	0	1	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3AL_chr17_207389_357807	0/0	c0014	948	1	1	0	0	0	0	copy fasta	RPH3AL	chr17	207389	357807