JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPH3AL_chr17_207389_357807	0/0	c0015	948	1	0	0	1	0	0	copy fasta	RPH3AL	chr17	207389	357807
RPH3A_chr12_112786748_112903881	0/0	c0001	2085	129	34	32	51	3	9	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	1/1	c0002	2085	91	20	13	40	5	11	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0003	2085	17	14	2	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0004	2085	8	3	0	5	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0005	2085	4	4	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0006	2085	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0007	2085	3	3	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0008	2085	2	0	0	2	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0009	2085	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0010	2085	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0011	2085	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0012	2085	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0013	2085	1	1	0	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0014	2085	1	0	0	0	0	1	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0015	2085	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0016	2085	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPH3A_chr12_112786748_112903881	0/0	c0017	2085	1	0	1	0	0	0	copy fasta	RPH3A	chr12	112786748	112903881
RPIA_chr2_88686673_88755929	1/1	c0001	936	360	89	66	141	18	44	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	c0002	936	4	4	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	c0003	936	2	0	0	2	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	c0004	936	1	1	0	0	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPIA_chr2_88686673_88755929	0/0	c0005	936	1	0	0	1	0	0	copy fasta	RPIA	chr2	88686673	88755929
RPL10A_chr6_35463401_35475780	1/1	c0001	654	404	80	74	192	12	44	copy fasta	RPL10A	chr6	35463401	35475780
RPL10A_chr6_35463401_35475780	0/0	c0002	654	2	0	0	2	0	0	copy fasta	RPL10A	chr6	35463401	35475780
RPL10L_chr14_46646010_46656781	1/1	c0001	645	365	82	72	158	16	35	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0002	645	5	5	0	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0003	645	5	4	1	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0004	645	2	0	0	2	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0005	645	2	1	1	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0006	645	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0007	645	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0008	645	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0009	645	1	1	0	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0010	645	1	0	0	0	0	1	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0011	645	1	0	0	1	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10L_chr14_46646010_46656781	0/0	c0012	645	1	1	0	0	0	0	copy fasta	RPL10L	chr14	46646010	46656781
RPL10_chrX_154393377_154407332	1/1	c0001	645	181	12	35	93	12	27	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	c0002	645	94	63	20	7	1	3	copy fasta	RPL10	chrX	154393377	154407332
RPL10_chrX_154393377_154407332	0/0	c0003	642	1	0	0	1	0	0	copy fasta	RPL10	chrX	154393377	154407332
RPL11_chr1_23686806_23701835	1/1	c0001	537	385	92	71	170	12	38	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	c0002	537	1	0	1	0	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	c0003	537	1	0	0	1	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL11_chr1_23686806_23701835	0/0	c0004	537	1	0	0	1	0	0	copy fasta	RPL11	chr1	23686806	23701835
RPL12_chr9_127442674_127456406	1/1	c0001	498	396	87	70	183	16	38	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	c0002	498	2	0	0	0	0	2	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	c0003	498	1	1	0	0	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL12_chr9_127442674_127456406	0/0	c0004	498	1	0	0	1	0	0	copy fasta	RPL12	chr9	127442674	127456406
RPL13A_chr19_49482608_49497308	1/1	c0001	612	329	90	63	119	13	42	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0002	612	2	0	0	0	1	1	copy fasta	RPL13A	chr19	49482608	49497308