JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPL13A_chr19_49482608_49497308	0/0	c0003	612	2	0	2	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0004	612	1	0	0	1	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0005	612	1	1	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0006	612	1	0	1	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0007	612	1	1	0	0	0	0	copy fasta	RPL13A	chr19	49482608	49497308
RPL13A_chr19_49482608_49497308	0/0	c0008	612	1	0	0	0	0	1	copy fasta	RPL13A	chr19	49482608	49497308
RPL13_chr16_89555682_89569542	1/0	c0001	636	292	70	53	132	7	29	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/1	c0002	636	44	9	4	18	2	10	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	c0003	636	28	0	17	0	7	4	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	c0004	636	19	15	1	2	0	1	copy fasta	RPL13	chr16	89555682	89569542
RPL13_chr16_89555682_89569542	0/0	c0005	636	3	2	1	0	0	0	copy fasta	RPL13	chr16	89555682	89569542
RPL14_chr3_40452339_40473587	0/1	c0001	654	108	11	16	68	1	11	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0002	657	95	11	13	55	3	13	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0003	663	77	4	15	44	5	9	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0004	651	39	20	4	11	1	3	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	1/0	c0005	648	22	14	4	0	1	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0006	666	14	2	2	8	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0007	639	12	9	2	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0008	660	9	3	1	3	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0009	645	9	9	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0010	663	8	0	1	7	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0011	645	6	6	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0012	642	3	3	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0013	681	3	0	0	3	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0014	684	3	1	1	1	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0015	636	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0016	639	2	0	0	0	0	2	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0017	669	2	0	0	2	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0018	639	1	1	0	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0019	648	1	0	1	0	0	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0020	654	1	0	0	0	1	0	copy fasta	RPL14	chr3	40452339	40473587
RPL14_chr3_40452339_40473587	0/0	c0021	657	1	0	0	0	0	1	copy fasta	RPL14	chr3	40452339	40473587
RPL15_chr3_23912132_23925989	1/1	c0001	615	448	90	80	214	16	46	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	c0002	615	3	3	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	c0003	615	1	1	0	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	c0004	615	1	0	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL15_chr3_23912132_23925989	0/0	c0005	615	1	0	1	0	0	0	copy fasta	RPL15	chr3	23912132	23925989
RPL17_chr18_49483481_49497465	1/0	c0001	555	433	93	69	209	18	43	copy fasta	RPL17	chr18	49483481	49497465
RPL17_chr18_49483481_49497465	0/0	c0002	555	9	0	3	6	0	0	copy fasta	RPL17	chr18	49483481	49497465
RPL17_chr18_49483481_49497465	0/0	c0003	555	1	0	0	0	0	1	copy fasta	RPL17	chr18	49483481	49497465
RPL17_chr18_49483481_49497465	0/0	c0004	555	1	1	0	0	0	0	copy fasta	RPL17	chr18	49483481	49497465
RPL17_chr18_49483481_49497465	0/0	c0005	555	1	0	0	1	0	0	copy fasta	RPL17	chr18	49483481	49497465
RPL18A_chr19_17854910_17868319	0/0	c0001	531	399	90	75	171	18	45	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0002	531	6	2	3	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0003	531	1	0	0	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0004	531	1	1	0	0	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0005	531	1	1	0	0	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0006	531	1	0	0	0	0	1	copy fasta	RPL18A	chr19	17854910	17868319
RPL18A_chr19_17854910_17868319	0/0	c0007	531	1	0	0	1	0	0	copy fasta	RPL18A	chr19	17854910	17868319
RPL18_chr19_48610331_48624178	1/1	c0001	567	377	90	75	153	14	43	copy fasta	RPL18	chr19	48610331	48624178