JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPL18_chr19_48610331_48624178	0/0	c0002	567	3	0	1	0	0	2	copy fasta	RPL18	chr19	48610331	48624178
RPL18_chr19_48610331_48624178	0/0	c0003	567	1	0	0	1	0	0	copy fasta	RPL18	chr19	48610331	48624178
RPL18_chr19_48610331_48624178	0/0	c0004	567	1	0	0	0	0	1	copy fasta	RPL18	chr19	48610331	48624178
RPL19_chr17_39195283_39209732	1/1	c0001	591	396	94	76	164	18	42	copy fasta	RPL19	chr17	39195283	39209732
RPL19_chr17_39195283_39209732	0/0	c0002	591	1	0	1	0	0	0	copy fasta	RPL19	chr17	39195283	39209732
RPL19_chr17_39195283_39209732	0/0	c0003	591	1	0	1	0	0	0	copy fasta	RPL19	chr17	39195283	39209732
RPL21_chr13_27246558_27261568	0/0	c0001	483	422	95	75	196	14	42	copy fasta	RPL21	chr13	27246558	27261568
RPL21_chr13_27246558_27261568	0/0	c0002	483	2	1	1	0	0	0	copy fasta	RPL21	chr13	27246558	27261568
RPL22L1_chr3_170859875_170875195	1/1	c0001	369	450	93	77	221	12	45	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	c0002	369	4	0	0	3	0	1	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	c0003	369	3	3	0	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22L1_chr3_170859875_170875195	0/0	c0004	369	1	0	1	0	0	0	copy fasta	RPL22L1	chr3	170859875	170875195
RPL22_chr1_6180020_6204595	1/1	c0001	387	370	98	68	150	14	38	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	c0002	387	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL22_chr1_6180020_6204595	0/0	c0003	387	1	0	0	1	0	0	copy fasta	RPL22	chr1	6180020	6204595
RPL23A_chr17_28714985_28729359	1/1	c0001	471	356	88	67	140	12	47	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	c0002	471	1	0	1	0	0	0	copy fasta	RPL23A	chr17	28714985	28729359
RPL23A_chr17_28714985_28729359	0/0	c0003	471	1	0	0	0	0	1	copy fasta	RPL23A	chr17	28714985	28729359
RPL23_chr17_38842860_38858721	1/1	c0001	423	418	90	78	196	14	38	copy fasta	RPL23	chr17	38842860	38858721
RPL24_chr3_101676091_101691718	1/1	c0001	474	434	92	69	217	14	40	copy fasta	RPL24	chr3	101676091	101691718
RPL24_chr3_101676091_101691718	0/0	c0002	474	10	0	3	7	0	0	copy fasta	RPL24	chr3	101676091	101691718
RPL26L1_chr5_172954424_172974771	1/1	c0001	438	372	95	69	147	16	43	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	c0002	438	8	0	0	8	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	c0003	438	3	1	1	0	0	1	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	c0004	438	2	0	0	2	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26L1_chr5_172954424_172974771	0/0	c0005	438	1	0	0	1	0	0	copy fasta	RPL26L1	chr5	172954424	172974771
RPL26_chr17_8372516_8388193	1/1	c0001	438	422	96	70	194	16	44	copy fasta	RPL26	chr17	8372516	8388193
RPL27A_chr11_8677792_8694872	1/1	c0001	447	313	64	60	143	10	34	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	c0002	447	86	9	12	53	4	8	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	c0003	447	44	24	4	12	2	2	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	c0004	447	2	0	0	2	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27A_chr11_8677792_8694872	0/0	c0005	447	1	1	0	0	0	0	copy fasta	RPL27A	chr11	8677792	8694872
RPL27_chr17_42993419_43007959	1/1	c0001	411	355	85	66	142	12	48	copy fasta	RPL27	chr17	42993419	43007959
RPL27_chr17_42993419_43007959	0/0	c0002	411	1	1	0	0	0	0	copy fasta	RPL27	chr17	42993419	43007959
RPL28_chr19_55380932_55397085	1/1	c0001	414	256	79	48	77	13	37	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	c0002	415	55	14	11	23	1	6	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	c0003	414	2	0	1	0	0	1	copy fasta	RPL28	chr19	55380932	55397085
RPL28_chr19_55380932_55397085	0/0	c0004	414	1	1	0	0	0	0	copy fasta	RPL28	chr19	55380932	55397085
RPL29_chr3_51988522_52000895	0/0	c0001	480	193	50	38	76	8	21	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/1	c0002	486	65	0	16	35	2	11	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	c0003	474	50	28	3	16	0	3	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	c0004	468	6	6	0	0	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	c0005	484	6	0	1	5	0	0	copy fasta	RPL29	chr3	51988522	52000895
RPL29_chr3_51988522_52000895	0/0	c0006	492	1	0	0	0	0	1	copy fasta	RPL29	chr3	51988522	52000895
RPL30_chr8_98036721_98050545	1/1	c0001	348	448	96	70	212	18	50	copy fasta	RPL30	chr8	98036721	98050545
RPL31_chr2_100997289_101012267	1/1	c0001	378	440	92	72	212	18	44	copy fasta	RPL31	chr2	100997289	101012267
RPL32_chr3_12829485_12846565	1/1	c0001	408	398	94	70	179	12	41	copy fasta	RPL32	chr3	12829485	12846565
RPL32_chr3_12829485_12846565	0/0	c0002	408	8	4	0	3	0	1	copy fasta	RPL32	chr3	12829485	12846565
RPL34_chr4_108615576_108630370	1/1	c0001	354	392	98	76	164	16	36	copy fasta	RPL34	chr4	108615576	108630370
RPL35A_chr3_197945190_197961610	1/1	c0001	333	371	89	66	158	14	42	copy fasta	RPL35A	chr3	197945190	197961610