JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPL35A_chr3_197945190_197961610	0/0	c0002	333	2	0	0	2	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35A_chr3_197945190_197961610	0/0	c0003	333	1	1	0	0	0	0	copy fasta	RPL35A	chr3	197945190	197961610
RPL35_chr9_124852883_124866957	0/0	c0001	372	404	94	75	183	14	38	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	c0002	372	1	0	0	1	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	c0003	372	1	0	0	0	0	1	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	c0004	372	1	0	0	0	0	1	copy fasta	RPL35	chr9	124852883	124866957
RPL35_chr9_124852883_124866957	0/0	c0005	372	1	0	1	0	0	0	copy fasta	RPL35	chr9	124852883	124866957
RPL36AL_chr14_49613530_49625626	1/1	c0001	321	307	72	54	131	13	35	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36AL_chr14_49613530_49625626	0/0	c0002	321	47	22	14	5	3	3	copy fasta	RPL36AL	chr14	49613530	49625626
RPL36A_chrX_101386011_101401155	1/1	c0001	321	317	78	54	143	11	29	copy fasta	RPL36A	chrX	101386011	101401155
RPL36_chr19_5685295_5696875	1/1	c0001	318	392	86	84	160	14	46	copy fasta	RPL36	chr19	5685295	5696875
RPL36_chr19_5685295_5696875	0/0	c0002	318	2	2	0	0	0	0	copy fasta	RPL36	chr19	5685295	5696875
RPL37A_chr2_216493844_216509086	1/1	c0001	279	433	94	70	208	15	44	copy fasta	RPL37A	chr2	216493844	216509086
RPL37A_chr2_216493844_216509086	0/0	c0002	279	7	0	4	0	1	2	copy fasta	RPL37A	chr2	216493844	216509086
RPL37_chr5_40820262_40840222	1/1	c0001	294	437	93	74	204	16	48	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	c0002	294	2	2	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL37_chr5_40820262_40840222	0/0	c0003	294	1	1	0	0	0	0	copy fasta	RPL37	chr5	40820262	40840222
RPL38_chr17_74198678_74215655	1/1	c0001	213	438	92	81	197	18	48	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	c0002	213	5	5	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	c0003	213	1	1	0	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	c0004	213	1	0	1	0	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL38_chr17_74198678_74215655	0/0	c0005	213	1	0	0	1	0	0	copy fasta	RPL38	chr17	74198678	74215655
RPL39L_chr3_187115948_187144496	1/1	c0001	156	397	93	74	170	16	42	copy fasta	RPL39L	chr3	187115948	187144496
RPL39L_chr3_187115948_187144496	0/0	c0002	156	3	1	2	0	0	0	copy fasta	RPL39L	chr3	187115948	187144496
RPL39_chrX_119781504_119796630	0/0	c0001	156	306	69	56	143	11	27	copy fasta	RPL39	chrX	119781504	119796630
RPL39_chrX_119781504_119796630	0/0	c0002	156	14	11	0	0	0	3	copy fasta	RPL39	chrX	119781504	119796630
RPL3L_chr16_1938974_1959689	1/1	c0001	1224	369	60	74	183	13	37	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0002	1224	24	12	4	1	2	5	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0003	1224	17	17	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0004	1224	11	0	0	8	0	3	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0005	1224	3	3	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0006	1224	3	0	0	3	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0007	1224	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0008	1224	2	0	2	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0009	1224	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0010	1224	2	0	0	2	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0011	1224	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0012	1224	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0013	1224	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0014	1224	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0015	1224	1	0	0	0	1	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0016	1224	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0017	1224	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0018	1224	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0019	1224	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0020	1224	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0021	1224	1	1	0	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0022	1224	1	0	1	0	0	0	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0023	1224	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3L_chr16_1938974_1959689	0/0	c0024	1224	1	0	0	1	0	0	copy fasta	RPL3L	chr16	1938974	1959689