JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPL3L_chr16_1938974_1959689	0/0	c0025	1224	1	0	0	0	0	1	copy fasta	RPL3L	chr16	1938974	1959689
RPL3_chr22_39307882_39324623	1/0	c0001	1212	246	55	42	107	10	31	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/1	c0002	1212	96	22	36	15	6	16	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0003	1212	15	14	1	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0004	1212	14	3	2	9	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0005	1212	3	0	0	2	0	1	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0006	1212	3	2	1	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0007	1212	1	1	0	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0008	1212	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0010	1212	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL3_chr22_39307882_39324623	0/0	c0011	1212	1	0	0	1	0	0	copy fasta	RPL3	chr22	39307882	39324623
RPL41_chr12_56111633_56122967	1/1	c0001	78	352	88	70	142	16	34	copy fasta	RPL41	chr12	56111633	56122967
RPL4_chr15_66493015_66509855	1/1	c0001	1284	403	87	78	175	17	44	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0002	1284	13	0	2	8	1	2	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0003	1284	4	4	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0004	1284	2	0	0	2	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0005	1284	2	2	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0006	1284	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0007	1284	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0008	1284	1	1	0	0	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL4_chr15_66493015_66509855	0/0	c0009	1284	1	0	0	1	0	0	copy fasta	RPL4	chr15	66493015	66509855
RPL5_chr1_92827040_92846924	1/0	c0001	894	313	82	61	109	18	42	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	c0002	894	13	13	0	0	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	c0003	894	3	1	0	0	0	2	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	c0004	894	1	0	0	1	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL5_chr1_92827040_92846924	0/0	c0005	894	1	0	1	0	0	0	copy fasta	RPL5	chr1	92827040	92846924
RPL6_chr12_112400189_112414605	1/1	c0001	867	399	91	69	179	12	46	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	c0002	867	3	1	2	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	c0003	867	1	0	1	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	c0004	867	1	1	0	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	c0005	867	1	0	0	1	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL6_chr12_112400189_112414605	0/0	c0006	867	1	1	0	0	0	0	copy fasta	RPL6	chr12	112400189	112414605
RPL7A_chr9_133343218_133356426	1/1	c0001	801	428	97	74	191	18	46	copy fasta	RPL7A	chr9	133343218	133356426
RPL7A_chr9_133343218_133356426	0/0	c0002	801	7	0	2	5	0	0	copy fasta	RPL7A	chr9	133343218	133356426
RPL7A_chr9_133343218_133356426	0/0	c0003	801	1	1	0	0	0	0	copy fasta	RPL7A	chr9	133343218	133356426
RPL7L1_chr6_42874616_42894900	1/1	c0001	768	386	92	79	157	18	38	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	c0002	768	6	2	3	0	0	1	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	c0003	768	5	0	0	0	0	5	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7L1_chr6_42874616_42894900	0/0	c0004	768	1	0	0	1	0	0	copy fasta	RPL7L1	chr6	42874616	42894900
RPL7_chr8_73285242_73298633	1/1	c0001	747	444	96	76	212	18	40	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	c0002	747	2	0	0	0	0	2	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	c0003	747	1	0	0	1	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL7_chr8_73285242_73298633	0/0	c0004	747	1	0	0	1	0	0	copy fasta	RPL7	chr8	73285242	73298633
RPL8_chr8_144784769_144797390	1/1	c0001	774	368	59	77	179	18	33	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	c0002	774	18	18	0	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	c0003	774	13	4	5	3	0	1	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	c0004	774	8	7	1	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	c0005	774	5	5	0	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL8_chr8_144784769_144797390	0/0	c0006	774	1	0	1	0	0	0	copy fasta	RPL8	chr8	144784769	144797390