JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPL8_chr8_144784769_144797390	0/0	c0007	774	1	1	0	0	0	0	copy fasta	RPL8	chr8	144784769	144797390
RPL9_chr4_39449124_39463922	0/0	c0001	579	304	52	64	143	7	38	copy fasta	RPL9	chr4	39449124	39463922
RPL9_chr4_39449124_39463922	0/0	c0002	579	137	41	13	70	7	6	copy fasta	RPL9	chr4	39449124	39463922
RPL9_chr4_39449124_39463922	0/0	c0003	579	3	0	3	0	0	0	copy fasta	RPL9	chr4	39449124	39463922
RPL9_chr4_39449124_39463922	0/0	c0004	579	1	1	0	0	0	0	copy fasta	RPL9	chr4	39449124	39463922
RPL9_chr4_39449124_39463922	0/0	c0005	579	1	0	0	1	0	0	copy fasta	RPL9	chr4	39449124	39463922
RPLP0_chr12_120191699_120206111	1/1	c0001	954	351	86	54	162	12	35	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0002	954	13	1	10	0	2	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0003	954	3	0	0	3	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0004	939	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0005	954	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0006	954	1	1	0	0	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0007	954	1	0	0	1	0	0	copy fasta	RPLP0	chr12	120191699	120206111
RPLP0_chr12_120191699_120206111	0/0	c0008	954	1	0	0	0	0	1	copy fasta	RPLP0	chr12	120191699	120206111
RPLP1_chr15_69447818_69461205	1/1	c0001	345	420	90	68	208	16	36	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	c0002	345	1	1	0	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP1_chr15_69447818_69461205	0/0	c0003	345	1	1	0	0	0	0	copy fasta	RPLP1	chr15	69447818	69461205
RPLP2_chr11_804967_817876	1/1	c0001	348	420	98	81	177	16	46	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	c0002	348	4	0	0	4	0	0	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	c0003	348	2	0	0	0	0	2	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	c0004	348	1	0	0	1	0	0	copy fasta	RPLP2	chr11	804967	817876
RPLP2_chr11_804967_817876	0/0	c0005	348	1	0	1	0	0	0	copy fasta	RPLP2	chr11	804967	817876
RPN1_chr3_128614969_128655818	1/0	c0001	1824	137	37	33	36	10	20	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/1	c0002	1824	120	27	24	54	3	11	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0003	1824	119	18	19	64	3	15	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0004	1824	6	6	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0005	1824	3	3	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0006	1824	1	0	0	1	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0007	1824	1	0	0	1	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN1_chr3_128614969_128655818	0/0	c0008	1824	1	1	0	0	0	0	copy fasta	RPN1	chr3	128614969	128655818
RPN2_chr20_37174330_37246619	0/1	c0001	1896	199	56	38	71	8	25	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	1/0	c0002	1896	129	19	25	70	4	10	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0003	1896	4	0	0	1	0	3	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0004	1896	3	0	0	3	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0005	1896	2	0	1	0	0	1	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0006	1896	2	0	0	2	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0007	1896	2	2	0	0	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0008	1896	2	0	0	2	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0009	1896	1	0	0	0	0	1	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0010	1896	1	1	0	0	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPN2_chr20_37174330_37246619	0/0	c0011	1896	1	0	0	1	0	0	copy fasta	RPN2	chr20	37174330	37246619
RPP14_chr3_58301245_58325193	1/1	c0001	375	367	92	80	139	10	44	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	c0002	375	2	2	0	0	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP14_chr3_58301245_58325193	0/0	c0003	375	1	0	0	1	0	0	copy fasta	RPP14	chr3	58301245	58325193
RPP21_chr6_30340156_30351857	0/0	c0001	465	212	27	42	124	5	14	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/1	c0002	465	101	35	11	27	7	20	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	c0003	465	76	22	14	33	2	5	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	c0004	465	68	2	16	37	4	9	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	c0005	465	5	4	1	0	0	0	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	c0006	465	2	2	0	0	0	0	copy fasta	RPP21	chr6	30340156	30351857