JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPP21_chr6_30340156_30351857	0/0	c0007	465	2	0	0	2	0	0	copy fasta	RPP21	chr6	30340156	30351857
RPP21_chr6_30340156_30351857	0/0	c0008	465	1	0	0	1	0	0	copy fasta	RPP21	chr6	30340156	30351857
RPP25L_chr9_34605495_34617097	1/1	c0001	492	424	94	78	192	16	42	copy fasta	RPP25L	chr9	34605495	34617097
RPP25_chr15_74949418_74961772	1/1	c0001	600	421	92	73	198	18	38	copy fasta	RPP25	chr15	74949418	74961772
RPP25_chr15_74949418_74961772	0/0	c0002	600	1	0	1	0	0	0	copy fasta	RPP25	chr15	74949418	74961772
RPP30_chr10_90866974_90907191	1/1	c0001	807	433	97	74	204	14	42	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	c0002	807	4	0	0	4	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	c0003	807	2	0	2	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP30_chr10_90866974_90907191	0/0	c0004	807	1	1	0	0	0	0	copy fasta	RPP30	chr10	90866974	90907191
RPP38_chr10_15092355_15109257	1/1	c0001	852	244	12	55	136	10	29	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0002	852	45	41	4	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0003	852	35	10	9	8	2	6	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0004	852	21	21	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0005	852	13	1	0	12	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0006	852	12	4	2	5	0	1	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0007	852	5	4	1	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0008	852	3	0	1	0	2	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0009	852	2	0	0	2	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0010	852	1	0	0	1	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP38_chr10_15092355_15109257	0/0	c0011	852	1	1	0	0	0	0	copy fasta	RPP38	chr10	15092355	15109257
RPP40_chr6_4989717_5009037	1/1	c0001	1092	207	30	51	97	8	19	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0002	1092	90	32	24	24	5	5	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0003	1092	21	7	3	1	0	10	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0004	1092	12	5	2	4	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0005	1092	7	6	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0006	1092	7	6	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0007	1092	5	5	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0008	1092	3	0	1	0	1	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0009	1092	3	3	0	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0010	1092	1	0	0	0	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0011	1092	1	0	0	1	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0012	1092	1	0	0	0	0	1	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0013	1092	1	0	1	0	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPP40_chr6_4989717_5009037	0/0	c0014	1092	1	0	0	1	0	0	copy fasta	RPP40	chr6	4989717	5009037
RPRD1A_chr18_35984824_36072559	0/1	c0001	939	294	77	53	126	6	31	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	1/0	c0002	939	16	9	3	0	0	3	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	c0003	939	5	5	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	c0004	939	2	0	0	2	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1A_chr18_35984824_36072559	0/0	c0005	939	1	1	0	0	0	0	copy fasta	RPRD1A	chr18	35984824	36072559
RPRD1B_chr20_38028746_38097364	1/1	c0001	981	283	51	41	152	12	25	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	c0002	981	100	42	15	34	0	9	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD1B_chr20_38028746_38097364	0/0	c0003	981	1	1	0	0	0	0	copy fasta	RPRD1B	chr20	38028746	38097364
RPRD2_chr1_150359147_150481566	1/0	c0001	4386	237	63	40	90	10	33	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0002	4386	36	11	8	17	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0003	4386	9	0	3	5	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0004	4386	8	8	0	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/1	c0005	4386	8	0	6	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0006	4386	7	0	0	7	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0007	4386	2	0	2	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0008	4386	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566