JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPRD2_chr1_150359147_150481566	0/0	c0009	4386	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0010	4386	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0011	4386	1	0	1	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0012	4386	1	0	0	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0013	4386	1	0	0	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0014	4386	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0015	4386	1	0	0	0	0	1	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0016	4386	1	0	0	1	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0017	4386	1	0	1	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRD2_chr1_150359147_150481566	0/0	c0018	4386	1	0	1	0	0	0	copy fasta	RPRD2	chr1	150359147	150481566
RPRML_chr17_46973156_46984253	1/0	c0001	363	408	92	70	196	13	36	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/1	c0002	363	38	3	14	13	1	6	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	c0003	363	2	2	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	c0004	363	2	0	0	2	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	c0005	363	1	1	0	0	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRML_chr17_46973156_46984253	0/0	c0006	363	1	0	0	1	0	0	copy fasta	RPRML	chr17	46973156	46984253
RPRM_chr2_153472338_153483762	1/1	c0001	330	408	100	78	170	16	42	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	c0002	330	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPRM_chr2_153472338_153483762	0/0	c0003	330	1	0	0	1	0	0	copy fasta	RPRM	chr2	153472338	153483762
RPS10_chr6_34412454_34431069	1/1	c0001	498	385	92	72	162	18	39	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	c0002	498	3	0	0	1	0	2	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	c0003	498	1	0	0	1	0	0	copy fasta	RPS10	chr6	34412454	34431069
RPS10_chr6_34412454_34431069	0/0	c0004	487	1	0	0	0	0	1	copy fasta	RPS10	chr6	34412454	34431069
RPS11_chr19_49491434_49504708	0/0	c0001	477	350	95	66	135	12	42	copy fasta	RPS11	chr19	49491434	49504708
RPS11_chr19_49491434_49504708	0/0	c0002	477	1	0	0	1	0	0	copy fasta	RPS11	chr19	49491434	49504708
RPS11_chr19_49491434_49504708	0/0	c0003	477	1	1	0	0	0	0	copy fasta	RPS11	chr19	49491434	49504708
RPS12_chr6_132809569_132822564	1/1	c0001	399	391	92	74	172	14	37	copy fasta	RPS12	chr6	132809569	132822564
RPS12_chr6_132809569_132822564	0/0	c0002	399	1	0	0	0	0	1	copy fasta	RPS12	chr6	132809569	132822564
RPS13_chr11_17069388_17082667	1/1	c0001	456	396	80	80	184	10	40	copy fasta	RPS13	chr11	17069388	17082667
RPS13_chr11_17069388_17082667	0/0	c0002	456	10	10	0	0	0	0	copy fasta	RPS13	chr11	17069388	17082667
RPS13_chr11_17069388_17082667	0/0	c0003	456	1	0	1	0	0	0	copy fasta	RPS13	chr11	17069388	17082667
RPS13_chr11_17069388_17082667	0/0	c0004	456	1	0	1	0	0	0	copy fasta	RPS13	chr11	17069388	17082667
RPS14_chr5_150437635_150454739	1/1	c0001	456	292	62	55	143	9	21	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	c0002	456	114	20	19	55	3	17	copy fasta	RPS14	chr5	150437635	150454739
RPS14_chr5_150437635_150454739	0/0	c0003	456	8	8	0	0	0	0	copy fasta	RPS14	chr5	150437635	150454739
RPS15A_chr16_18776295_18795334	1/1	c0001	393	349	95	64	134	14	40	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	c0002	393	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15_chr19_1433396_1445495	1/1	c0001	438	358	94	76	136	15	35	copy fasta	RPS15	chr19	1433396	1445495
RPS15_chr19_1433396_1445495	0/0	c0002	438	21	3	2	6	3	7	copy fasta	RPS15	chr19	1433396	1445495
RPS15_chr19_1433396_1445495	0/0	c0003	438	1	1	0	0	0	0	copy fasta	RPS15	chr19	1433396	1445495
RPS16_chr19_39428137_39440949	0/0	c0001	441	168	27	30	84	6	21	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	1/1	c0002	441	146	17	28	76	5	18	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0003	441	44	15	8	10	3	8	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0004	441	38	26	0	11	0	1	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0005	441	9	9	0	0	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0006	441	2	0	0	2	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0007	441	2	0	0	2	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS16_chr19_39428137_39440949	0/0	c0008	441	1	0	0	1	0	0	copy fasta	RPS16	chr19	39428137	39440949
RPS17_chr15_82531750_82545457	0/1	c0001	408	338	76	64	165	12	20	copy fasta	RPS17	chr15	82531750	82545457
RPS17_chr15_82531750_82545457	0/0	c0002	408	103	12	11	51	6	23	copy fasta	RPS17	chr15	82531750	82545457