JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATAT1_chr6_30621874_30651821	0/0	c0002	1266	16	6	1	9	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0003	1267	12	1	7	3	0	1	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0004	1266	5	3	1	0	0	1	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0005	1267	4	0	1	3	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0006	1266	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0007	1266	1	0	0	1	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0008	1079	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	c0009	1266	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATCAY_chr19_3875685_3933082	1/1	c0001	1116	375	91	79	145	18	40	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0002	1116	3	3	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0003	1116	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0004	1116	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0005	1116	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0006	1116	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0007	1116	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	c0008	1116	1	0	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATE1_chr10_121735424_121933031	0/1	c0001	1557	145	28	20	75	4	17	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0002	1557	129	37	25	50	4	13	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0003	1557	21	3	8	7	0	3	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0004	1557	7	2	4	1	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0005	1557	5	4	0	1	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	1/0	c0006	1557	4	2	0	1	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0007	1557	3	2	0	0	0	1	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0008	1557	2	2	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0009	1557	2	1	0	1	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0010	1557	1	1	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	c0011	1557	1	0	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATF1_chr12_50759101_50826162	1/0	c0001	816	228	41	44	122	3	17	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/1	c0002	816	138	45	17	54	5	16	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	c0003	816	12	1	4	0	2	5	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	c0004	816	1	0	1	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	c0005	816	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	c0006	816	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	c0007	816	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF2_chr2_175067259_175173203	1/1	c0001	1518	222	67	28	83	14	28	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	c0002	1518	1	0	0	1	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	c0003	1518	1	1	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF3_chr1_212603761_212625775	1/1	c0001	546	394	90	62	184	15	41	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	c0002	546	52	0	16	34	1	1	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	c0003	546	2	0	0	0	0	2	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	c0004	546	1	1	0	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	c0005	546	1	1	0	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF4_chr22_39515562_39527683	1/0	c0001	1056	227	51	47	92	10	26	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/1	c0002	1056	87	17	14	30	7	18	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0003	1056	10	9	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0004	1056	4	0	0	4	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0005	1056	4	4	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0006	1056	3	2	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0007	1056	3	3	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0008	1056	2	2	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683