JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPS17_chr15_82531750_82545457	0/0	c0003	408	13	12	1	0	0	0	copy fasta	RPS17	chr15	82531750	82545457
RPS17_chr15_82531750_82545457	0/0	c0004	408	1	0	0	0	0	1	copy fasta	RPS17	chr15	82531750	82545457
RPS18_chr6_33267075_33281511	0/1	c0001	459	375	96	70	158	14	36	copy fasta	RPS18	chr6	33267075	33281511
RPS19BP1_chr22_39524093_39537748	1/1	c0001	411	323	84	63	114	18	42	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19BP1_chr22_39524093_39537748	0/0	c0002	411	4	3	1	0	0	0	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19BP1_chr22_39524093_39537748	0/0	c0003	411	1	1	0	0	0	0	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19_chr19_41855255_41877925	1/1	c0001	438	389	86	61	186	16	38	copy fasta	RPS19	chr19	41855255	41877925
RPS19_chr19_41855255_41877925	0/0	c0002	438	1	0	1	0	0	0	copy fasta	RPS19	chr19	41855255	41877925
RPS20_chr8_56068054_56079506	0/0	c0001	360	304	85	54	120	10	35	copy fasta	RPS20	chr8	56068054	56079506
RPS20_chr8_56068054_56079506	0/1	c0002	360	27	1	14	0	4	7	copy fasta	RPS20	chr8	56068054	56079506
RPS21_chr20_62382103_62393520	0/0	c0001	252	386	85	75	172	16	38	copy fasta	RPS21	chr20	62382103	62393520
RPS21_chr20_62382103_62393520	0/0	c0002	252	25	13	7	1	0	4	copy fasta	RPS21	chr20	62382103	62393520
RPS21_chr20_62382103_62393520	0/0	c0003	252	1	0	0	1	0	0	copy fasta	RPS21	chr20	62382103	62393520
RPS23_chr5_82268320_82283354	1/1	c0001	432	418	94	76	184	16	46	copy fasta	RPS23	chr5	82268320	82283354
RPS24_chr10_78028863_78045697	1/1	c0001	393	421	91	78	192	14	44	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	c0002	393	4	4	0	0	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	c0003	393	2	0	2	0	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	c0004	393	1	1	0	0	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	c0005	393	1	0	0	1	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	c0006	417	1	0	0	1	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS25_chr11_119010717_119023343	1/0	c0001	378	329	71	71	134	14	38	copy fasta	RPS25	chr11	119010717	119023343
RPS25_chr11_119010717_119023343	0/0	c0002	378	26	25	1	0	0	0	copy fasta	RPS25	chr11	119010717	119023343
RPS26_chr12_56036918_56049697	1/1	c0001	348	352	59	69	174	16	32	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	c0002	348	25	24	1	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS26_chr12_56036918_56049697	0/0	c0003	348	1	1	0	0	0	0	copy fasta	RPS26	chr12	56036918	56049697
RPS27A_chr2_55227688_55240853	1/1	c0001	471	435	88	82	210	17	36	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	c0002	471	3	3	0	0	0	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	c0003	471	1	0	0	0	1	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	c0004	471	1	1	0	0	0	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27L_chr15_63143249_63162477	1/1	c0001	255	430	98	76	194	16	44	copy fasta	RPS27L	chr15	63143249	63162477
RPS27_chr1_153985762_153997155	0/0	c0001	255	402	84	76	188	12	42	copy fasta	RPS27	chr1	153985762	153997155
RPS28_chr19_8316496_8328340	1/1	c0001	210	404	90	80	174	18	40	copy fasta	RPS28	chr19	8316496	8328340
RPS29_chr14_49578577_49591380	1/0	c0001	171	334	93	76	110	16	38	copy fasta	RPS29	chr14	49578577	49591380
RPS29_chr14_49578577_49591380	0/0	c0002	171	1	1	0	0	0	0	copy fasta	RPS29	chr14	49578577	49591380
RPS2_chr16_1957058_1969826	0/1	c0001	882	297	89	48	130	5	24	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	1/0	c0002	882	71	2	14	38	7	9	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0003	882	44	1	18	6	2	17	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0004	882	14	0	0	14	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0005	882	4	4	0	0	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0006	882	3	0	0	3	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0007	882	2	0	0	2	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0008	882	2	2	0	0	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	c0009	882	1	0	0	1	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS3A_chr4_151094628_151109642	1/1	c0001	795	389	90	72	171	10	44	copy fasta	RPS3A	chr4	151094628	151109642
RPS3A_chr4_151094628_151109642	0/0	c0002	795	1	0	0	1	0	0	copy fasta	RPS3A	chr4	151094628	151109642
RPS3_chr11_75394518_75411907	1/1	c0001	732	409	83	77	181	18	48	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	c0002	732	1	0	1	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	c0003	732	1	1	0	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	c0004	732	1	0	0	1	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS4X_chrX_72267042_72282248	1/1	c0001	792	254	64	25	144	0	19	copy fasta	RPS4X	chrX	72267042	72282248