JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPS6KA2_chr6_166404364_166632251	0/0	c0018	2202	3	3	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0019	2202	3	3	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0020	2202	3	0	2	0	1	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0021	2202	3	0	2	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0022	2202	3	3	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0023	2202	2	0	0	2	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0024	2202	2	0	1	0	1	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0025	2202	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0026	2202	2	2	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0027	2202	2	0	2	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0028	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0029	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0030	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0031	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0032	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0033	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0034	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0035	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0036	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0037	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0038	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0039	2202	1	0	0	0	0	1	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0040	2202	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0041	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0042	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0043	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0044	2202	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0045	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0046	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0047	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0048	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0049	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0050	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0051	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0052	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0053	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0054	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0055	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0056	2202	1	0	0	1	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0057	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0058	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0059	2202	1	0	1	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0060	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0061	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0062	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0063	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0064	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA2_chr6_166404364_166632251	0/0	c0065	2202	1	1	0	0	0	0	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA3_chrX_20144911_20271909	1/1	c0001	2223	149	31	28	65	6	17	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	c0002	2223	57	30	14	7	3	3	copy fasta	RPS6KA3	chrX	20144911	20271909