JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPS6KA3_chrX_20144911_20271909	0/0	c0003	2223	2	1	1	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	c0004	2223	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	c0005	2224	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	c0006	2222	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	c0007	2223	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA4_chr11_64354162_64377215	1/1	c0001	2319	283	87	40	114	11	29	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0002	2319	104	5	28	49	5	17	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0003	2319	5	0	5	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0004	2319	3	2	1	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0005	2319	1	1	0	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0006	2319	1	0	0	0	0	1	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0007	2319	1	0	0	1	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0008	2319	1	1	0	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0009	2319	1	0	0	1	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0010	2319	1	0	0	0	0	1	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	c0011	2319	1	0	0	1	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA5_chr14_90842861_91065641	1/1	c0001	2409	288	84	52	103	8	39	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0002	2409	10	0	0	10	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0003	2409	4	0	0	4	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0004	2409	1	0	0	0	0	1	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0005	2409	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0006	2409	1	1	0	0	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA5_chr14_90842861_91065641	0/0	c0007	2409	1	0	0	1	0	0	copy fasta	RPS6KA5	chr14	90842861	91065641
RPS6KA6_chrX_84053350_84193199	1/1	c0001	2238	208	52	35	92	5	22	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	c0002	2238	61	5	14	37	0	5	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	c0003	2238	1	0	1	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	c0004	2238	1	1	0	0	0	0	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KA6_chrX_84053350_84193199	0/0	c0005	2238	1	0	0	0	0	1	copy fasta	RPS6KA6	chrX	84053350	84193199
RPS6KB1_chr17_59888121_59955574	1/1	c0001	1578	303	85	54	126	2	34	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB1_chr17_59888121_59955574	0/0	c0002	1578	1	1	0	0	0	0	copy fasta	RPS6KB1	chr17	59888121	59955574
RPS6KB2_chr11_67423494_67440401	1/1	c0001	1449	171	14	22	95	9	29	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0002	1449	129	26	36	56	5	6	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0003	1449	44	43	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0004	1449	16	0	2	13	0	1	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0005	1449	5	5	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0006	1449	2	0	0	2	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0007	1449	2	2	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0008	1449	2	0	2	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0009	1449	1	1	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0010	1449	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0011	1449	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0012	1449	1	0	1	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0013	1449	1	1	0	0	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0014	1449	1	0	0	1	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KB2_chr11_67423494_67440401	0/0	c0015	1449	1	0	0	1	0	0	copy fasta	RPS6KB2	chr11	67423494	67440401
RPS6KC1_chr1_213046241_213279774	1/1	c0001	3201	281	70	50	128	12	19	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0002	3201	26	1	3	20	0	2	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0003	3201	10	10	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0004	3201	4	3	1	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0005	3201	4	4	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774