JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPS6KC1_chr1_213046241_213279774	0/0	c0006	3201	2	2	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0007	3201	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0008	3201	1	0	0	0	0	1	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KC1_chr1_213046241_213279774	0/0	c0009	3201	1	1	0	0	0	0	copy fasta	RPS6KC1	chr1	213046241	213279774
RPS6KL1_chr14_74898951_74928260	1/0	c0001	1650	233	58	50	90	7	27	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/1	c0002	1650	97	2	16	65	3	10	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0003	1650	16	12	1	3	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0004	1650	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0005	1650	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0006	1650	3	2	1	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0007	1650	3	3	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0008	1650	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0009	1650	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0010	1650	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0011	1650	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0012	1650	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0013	1650	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0014	1650	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0015	1650	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0016	1650	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0017	1650	1	0	0	0	0	1	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0018	1650	1	1	0	0	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6KL1_chr14_74898951_74928260	0/0	c0019	1650	1	0	0	1	0	0	copy fasta	RPS6KL1	chr14	74898951	74928260
RPS6_chr9_19370715_19385236	1/1	c0001	750	421	99	76	180	16	48	copy fasta	RPS6	chr9	19370715	19385236
RPS6_chr9_19370715_19385236	0/0	c0002	750	1	1	0	0	0	0	copy fasta	RPS6	chr9	19370715	19385236
RPS7_chr2_3570260_3585920	1/1	c0001	585	428	99	86	179	16	46	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/0	c0002	585	1	0	0	1	0	0	copy fasta	RPS7	chr2	3570260	3585920
RPS7_chr2_3570260_3585920	0/0	c0003	585	1	1	0	0	0	0	copy fasta	RPS7	chr2	3570260	3585920
RPS8_chr1_44770540_44783779	1/1	c0001	627	391	82	67	180	16	44	copy fasta	RPS8	chr1	44770540	44783779
RPS8_chr1_44770540_44783779	0/0	c0002	627	10	9	1	0	0	0	copy fasta	RPS8	chr1	44770540	44783779
RPS8_chr1_44770540_44783779	0/0	c0003	627	1	1	0	0	0	0	copy fasta	RPS8	chr1	44770540	44783779
RPS9_chr19_54195858_54212647	0/1	c0001	585	418	79	83	212	13	30	copy fasta	RPS9	chr19	54195858	54212647
RPS9_chr19_54195858_54212647	0/0	c0002	585	26	4	4	0	2	16	copy fasta	RPS9	chr19	54195858	54212647
RPS9_chr19_54195858_54212647	0/0	c0003	585	11	7	1	0	1	2	copy fasta	RPS9	chr19	54195858	54212647
RPS9_chr19_54195858_54212647	0/0	c0004	585	1	0	0	0	0	1	copy fasta	RPS9	chr19	54195858	54212647
RPS9_chr19_54195858_54212647	0/0	c0005	585	1	0	0	0	0	1	copy fasta	RPS9	chr19	54195858	54212647
RPSA2_chr19_23758004_23833868	0/1	c0001	888	196	42	36	79	8	30	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0002	888	111	15	25	61	4	6	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0003	888	27	7	8	12	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	1/0	c0004	888	7	5	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0005	888	5	5	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0006	888	3	2	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0007	888	3	3	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0008	888	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0009	888	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0010	888	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0011	888	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0012	888	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0013	888	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	c0014	888	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868