JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPTOR_chr17_80539838_80971368	0/0	c0067	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0068	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0069	4031	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0070	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0071	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0072	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0073	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0074	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0075	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0076	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0077	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0078	4008	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0079	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0080	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0081	4008	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0082	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0083	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0084	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0085	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0086	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0087	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0088	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0089	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0090	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0091	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0092	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0093	4008	1	0	1	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0094	4008	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0095	4008	1	0	0	0	1	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0096	4008	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	c0097	4008	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPUSD1_chr16_779974_793381	1/1	c0001	939	361	68	74	158	16	43	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0002	939	13	7	3	3	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0003	939	10	8	2	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0004	939	5	4	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0005	939	4	0	0	4	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0006	939	3	3	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0007	939	2	2	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0008	939	1	0	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0009	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0010	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0011	939	1	0	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0012	939	1	1	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0013	939	1	1	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0014	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0015	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0016	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0017	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0018	939	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	c0019	939	1	0	0	0	0	1	copy fasta	RPUSD1	chr16	779974	793381