JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RPUSD2_chr15_40564299_40579949	1/1	c0001	1638	294	58	42	153	6	33	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0002	1638	76	19	20	20	4	13	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0003	1638	5	4	1	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0004	1638	4	0	0	4	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0005	1638	4	4	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0006	1638	3	3	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0007	1638	3	0	3	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0008	1638	1	1	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0009	1638	1	0	0	1	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	c0010	1638	1	1	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD3_chr3_9832849_9849008	1/1	c0001	1032	386	71	71	189	17	36	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0002	1032	37	7	8	16	0	6	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0003	1032	6	6	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0004	1032	5	5	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0005	1032	4	2	0	0	1	1	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0006	1032	4	0	0	4	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0007	1032	3	0	0	3	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0008	1032	3	3	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0009	1032	2	0	0	2	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0010	1032	1	0	1	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	c0011	1032	1	0	0	0	0	1	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD4_chr11_126197096_126216650	1/0	c0001	1134	184	64	43	49	7	20	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0002	1134	133	4	23	85	6	15	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/1	c0003	1134	84	22	13	37	3	8	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0004	1134	4	0	0	0	0	4	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0005	1134	3	3	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0006	1134	2	2	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0007	1134	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0009	1134	1	0	0	0	0	1	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0010	1134	1	1	0	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0011	1134	1	0	0	1	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RPUSD4_chr11_126197096_126216650	0/0	c0012	1134	1	0	1	0	0	0	copy fasta	RPUSD4	chr11	126197096	126216650
RRAD_chr16_66916685_66930535	1/1	c0001	927	346	71	65	154	13	41	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	c0002	927	28	17	3	6	1	1	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	c0003	927	11	11	0	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAD_chr16_66916685_66930535	0/0	c0004	927	1	1	0	0	0	0	copy fasta	RRAD	chr16	66916685	66930535
RRAGA_chr9_19044427_19056025	1/1	c0001	942	443	97	68	209	17	50	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	c0002	942	1	0	0	1	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	c0003	942	1	1	0	0	0	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGA_chr9_19044427_19056025	0/0	c0004	942	1	0	0	0	1	0	copy fasta	RRAGA	chr9	19044427	19056025
RRAGB_chrX_55712749_55763774	1/1	c0001	1041	275	76	49	115	7	26	copy fasta	RRAGB	chrX	55712749	55763774
RRAGB_chrX_55712749_55763774	0/0	c0002	1042	1	0	0	1	0	0	copy fasta	RRAGB	chrX	55712749	55763774
RRAGC_chr1_38833198_38864772	1/1	c0001	1200	403	87	65	192	18	39	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	c0002	1200	10	5	3	0	0	2	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	c0003	1200	3	2	0	0	0	1	copy fasta	RRAGC	chr1	38833198	38864772
RRAGC_chr1_38833198_38864772	0/0	c0004	1200	2	0	0	2	0	0	copy fasta	RRAGC	chr1	38833198	38864772
RRAGD_chr6_89359616_89417273	1/1	c0001	1203	360	86	66	154	16	36	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	c0002	1203	7	6	0	0	1	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	c0003	1203	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273