JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RRAGD_chr6_89359616_89417273	0/0	c0004	1203	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	c0005	1203	1	0	0	0	0	1	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	c0006	1203	1	0	0	0	1	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAGD_chr6_89359616_89417273	0/0	c0007	1203	1	1	0	0	0	0	copy fasta	RRAGD	chr6	89359616	89417273
RRAS2_chr11_14272922_14364183	1/0	c0001	615	275	78	44	102	16	34	copy fasta	RRAS2	chr11	14272922	14364183
RRAS2_chr11_14272922_14364183	0/0	c0002	615	4	0	0	4	0	0	copy fasta	RRAS2	chr11	14272922	14364183
RRAS_chr19_49630292_49645143	0/1	c0001	657	317	68	60	151	8	29	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	1/0	c0002	657	90	20	21	29	2	17	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0003	657	2	1	1	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0004	657	1	0	0	1	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0005	657	1	1	0	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0006	657	1	0	0	1	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0007	657	1	1	0	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRAS_chr19_49630292_49645143	0/0	c0008	657	1	1	0	0	0	0	copy fasta	RRAS	chr19	49630292	49645143
RRBP1_chr20_17608679_17687242	0/0	c0001	4713	52	2	9	31	1	9	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0002	4713	51	0	1	45	0	5	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0003	4683	16	1	9	6	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0004	4713	12	1	0	8	0	3	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0005	4713	8	7	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0006	4683	8	1	2	0	2	3	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0007	4683	7	0	3	0	1	3	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0008	4743	7	7	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0009	4743	6	0	1	4	1	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0010	4713	6	6	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0011	4743	6	0	0	5	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0012	4713	6	0	0	5	0	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0013	4683	6	0	4	0	1	1	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0014	4743	5	4	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0015	4773	4	3	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0016	4713	4	4	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0017	4743	4	4	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0018	4683	4	0	0	4	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0019	4743	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0020	4743	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0021	4743	3	3	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0022	4713	3	0	3	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0023	4713	3	0	1	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0024	4713	3	0	1	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0025	4713	3	0	0	3	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0026	4713	3	0	2	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0027	4713	2	0	2	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0028	4683	2	0	0	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0029	4683	2	0	1	1	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0030	4683	2	0	0	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0031	4683	2	1	1	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0032	4683	2	2	0	0	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0033	4713	2	0	0	0	2	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0034	4713	2	0	0	0	0	2	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0035	4713	2	0	0	2	0	0	copy fasta	RRBP1	chr20	17608679	17687242
RRBP1_chr20_17608679_17687242	0/0	c0036	4683	2	0	1	0	1	0	copy fasta	RRBP1	chr20	17608679	17687242