JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATF4_chr22_39515562_39527683	0/0	c0009	1056	2	0	0	2	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0010	1056	2	2	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0011	1056	1	0	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0012	1056	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0013	1056	1	0	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0014	1056	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0015	1056	1	0	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0016	1056	1	0	0	1	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0017	1056	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0018	1056	1	0	0	0	1	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0019	1056	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	c0020	1056	1	0	0	1	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF5_chr19_49924205_49938935	0/0	c0001	849	188	40	35	93	7	13	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	1/0	c0002	849	77	5	20	31	4	16	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0003	849	63	7	9	37	0	10	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0004	849	42	15	8	17	0	2	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/1	c0005	849	40	7	6	18	1	7	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0006	849	9	9	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0007	849	5	5	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0008	849	4	3	0	0	0	1	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0009	849	3	0	0	3	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0010	849	3	3	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0011	849	2	1	0	0	0	1	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0012	849	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0013	849	1	0	1	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0014	849	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0015	849	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0016	849	1	0	1	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0017	849	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0018	849	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	c0019	849	1	1	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF6B_chr6_32110264_32133246	0/0	c0001	2112	325	79	50	151	10	35	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/1	c0002	2112	82	2	21	45	5	8	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0003	2112	16	7	7	0	2	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0004	2112	3	0	1	0	1	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0005	2112	2	1	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0006	2112	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0007	2112	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0008	2112	1	0	0	1	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0009	2112	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0010	2112	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0011	2112	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0012	2112	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0013	2112	1	0	0	1	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0014	2112	1	0	1	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0015	2112	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	c0016	2112	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6_chr1_161761320_161969070	1/0	c0001	2013	91	29	13	29	1	18	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/1	c0002	2013	81	16	19	27	7	11	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0003	2013	75	4	21	46	1	3	copy fasta	ATF6	chr1	161761320	161969070