JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RREB1_chr6_7102961_7256980	0/0	c0010	5229	9	1	4	1	2	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0011	5229	7	7	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0012	5229	4	3	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0013	5229	4	4	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0014	5229	4	0	0	4	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0015	5229	3	1	0	0	0	2	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0016	5229	3	0	0	3	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0017	5229	3	0	1	1	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0018	5229	3	0	0	3	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0019	5229	3	0	2	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0020	5229	3	3	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0021	5229	2	0	1	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0022	5229	2	1	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0023	5229	2	0	0	2	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0024	5229	2	1	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0025	5229	2	2	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0026	5229	2	2	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0027	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0028	5229	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0029	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0030	5229	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0031	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0032	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0033	5229	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0034	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0035	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0036	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0037	5229	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0038	5229	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0039	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0040	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0041	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0042	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0043	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0044	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0045	5229	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0046	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0047	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0048	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0049	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0050	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0051	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0052	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0053	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0054	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0055	5229	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0056	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0057	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0058	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0059	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980