JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RREB1_chr6_7102961_7256980	0/0	c0060	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0061	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0062	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0063	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0064	5229	1	0	0	0	0	1	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0065	5229	1	0	0	0	1	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0066	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0067	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0068	5229	1	0	1	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0069	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0070	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0071	5229	1	0	0	1	0	0	copy fasta	RREB1	chr6	7102961	7256980
RREB1_chr6_7102961_7256980	0/0	c0072	5229	1	1	0	0	0	0	copy fasta	RREB1	chr6	7102961	7256980
RRH_chr4_109822972_109849942	1/1	c0001	1014	327	71	57	142	16	39	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0002	1014	53	0	10	40	0	3	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0003	1014	16	16	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0004	1014	3	0	0	3	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0005	1014	1	1	0	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0006	1014	1	0	1	0	0	0	copy fasta	RRH	chr4	109822972	109849942
RRH_chr4_109822972_109849942	0/0	c0007	1014	1	0	0	1	0	0	copy fasta	RRH	chr4	109822972	109849942
RRM1_chr11_4089799_4143932	0/1	c0001	2379	170	52	30	63	2	22	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0002	2379	105	2	23	63	4	13	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	1/0	c0003	2379	77	22	16	31	2	5	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0004	2379	5	5	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0005	2379	3	3	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0006	2379	3	3	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0007	2379	2	2	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0008	2379	1	1	0	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0009	2379	1	0	0	1	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM1_chr11_4089799_4143932	0/0	c0010	2379	1	0	1	0	0	0	copy fasta	RRM1	chr11	4089799	4143932
RRM2B_chr8_102199502_102243961	1/1	c0001	1056	382	90	75	157	15	43	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	c0002	1056	3	0	1	0	1	1	copy fasta	RRM2B	chr8	102199502	102243961
RRM2B_chr8_102199502_102243961	0/0	c0003	1056	1	0	0	1	0	0	copy fasta	RRM2B	chr8	102199502	102243961
RRM2_chr2_10117739_10136414	1/1	c0001	1170	342	82	71	138	16	33	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	c0002	1170	10	10	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	c0003	1170	2	0	2	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	c0004	1170	2	2	0	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	c0005	1170	1	0	0	0	0	1	copy fasta	RRM2	chr2	10117739	10136414
RRM2_chr2_10117739_10136414	0/0	c0006	1170	1	0	1	0	0	0	copy fasta	RRM2	chr2	10117739	10136414
RRN3_chr16_15055033_15099272	0/0	c0001	1956	335	63	59	162	13	38	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0002	1956	40	19	4	14	0	3	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0003	1956	13	0	7	0	3	3	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0004	1956	3	0	2	0	0	1	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/1	c0005	1956	2	0	0	0	1	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0006	1956	2	2	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0007	1956	2	0	0	2	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0008	1956	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0009	1956	1	0	0	0	0	1	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0010	1956	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0011	1956	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272