JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RRN3_chr16_15055033_15099272	0/0	c0012	1956	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0013	1956	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0014	1956	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0015	1956	1	0	0	1	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0016	1956	1	0	0	0	1	0	copy fasta	RRN3	chr16	15055033	15099272
RRN3_chr16_15055033_15099272	0/0	c0017	1956	1	1	0	0	0	0	copy fasta	RRN3	chr16	15055033	15099272
RRP12_chr10_97351701_97406340	0/1	c0001	3894	132	16	37	56	10	12	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0002	3894	92	9	16	52	4	11	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	1/0	c0003	3894	34	8	1	22	1	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0004	3894	28	18	0	9	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0005	3894	21	2	2	14	1	2	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0006	3894	12	11	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0007	3894	11	11	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0008	3894	10	9	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0009	3894	6	0	0	6	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0010	3906	6	0	0	5	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0011	3894	5	0	5	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0012	3894	4	0	1	3	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0013	3894	4	0	1	1	0	2	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0014	3894	4	3	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0015	3894	3	3	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0016	3894	3	0	0	3	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0017	3894	2	0	0	0	0	2	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0018	3894	2	2	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0019	3894	2	0	2	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0020	3894	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0021	3894	1	0	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0022	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0023	3894	1	0	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0024	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0025	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0026	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0027	3894	1	0	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0028	3894	1	0	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0029	3894	1	0	1	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0030	3894	1	0	0	0	0	1	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0031	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0032	3894	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0033	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0034	3894	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0035	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0036	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0037	3894	1	1	0	0	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP12_chr10_97351701_97406340	0/0	c0038	3894	1	0	0	1	0	0	copy fasta	RRP12	chr10	97351701	97406340
RRP15_chr1_218280293_218342983	1/1	c0001	849	318	70	59	148	15	24	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0002	849	18	1	0	16	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0003	849	12	10	2	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0004	849	5	4	1	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0005	849	2	0	0	2	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0006	849	1	0	0	0	1	0	copy fasta	RRP15	chr1	218280293	218342983