JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RRP15_chr1_218280293_218342983	0/0	c0007	849	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0008	849	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0009	849	1	0	0	0	0	1	copy fasta	RRP15	chr1	218280293	218342983
RRP15_chr1_218280293_218342983	0/0	c0010	849	1	1	0	0	0	0	copy fasta	RRP15	chr1	218280293	218342983
RRP1B_chr21_43654560_43701079	0/0	c0001	2277	227	37	48	119	5	18	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/1	c0002	2277	46	0	23	1	5	16	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	1/0	c0003	2277	34	0	0	33	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0004	2277	22	21	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0005	2277	14	14	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0006	2277	10	9	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0007	2277	5	4	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0008	2277	3	3	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0009	2277	2	0	0	2	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0010	2277	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0012	2277	1	0	0	0	0	1	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0013	2277	1	0	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0014	2277	1	0	0	0	0	1	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0015	2277	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0016	2277	1	1	0	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0017	2277	1	0	0	1	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1B_chr21_43654560_43701079	0/0	c0018	2277	1	0	1	0	0	0	copy fasta	RRP1B	chr21	43654560	43701079
RRP1_chr21_43784577_43810293	0/0	c0001	1386	102	12	21	56	4	9	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0002	1386	101	32	24	31	2	12	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	1/1	c0003	1386	98	15	26	33	8	14	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0004	1386	41	2	4	30	0	5	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0005	1386	20	20	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0006	1386	10	8	2	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0007	1386	6	0	0	5	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0008	1386	5	4	1	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0009	1386	3	2	1	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0010	1386	2	0	0	2	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0013	1386	1	0	0	0	0	1	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0014	1386	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0015	1386	1	0	1	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP1_chr21_43784577_43810293	0/0	c0016	1386	1	1	0	0	0	0	copy fasta	RRP1	chr21	43784577	43810293
RRP36_chr6_43016623_43034599	1/0	c0001	780	163	25	44	67	12	14	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/1	c0002	774	117	34	15	51	2	14	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0003	774	11	9	2	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0004	762	11	1	8	2	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0005	774	9	9	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0006	774	4	4	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0007	774	3	3	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0008	780	3	3	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0009	774	2	0	0	0	0	2	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0010	780	2	0	0	1	0	1	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0011	780	2	0	1	0	0	1	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0012	768	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599