JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RRP36_chr6_43016623_43034599	0/0	c0013	768	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0014	774	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0015	774	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0016	780	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0017	780	1	0	0	1	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP36_chr6_43016623_43034599	0/0	c0018	780	1	1	0	0	0	0	copy fasta	RRP36	chr6	43016623	43034599
RRP7A_chr22_42503344_42524796	0/0	c0001	843	121	3	4	106	0	8	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	1/1	c0002	843	115	10	45	24	10	24	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0003	843	70	28	3	34	2	3	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0004	843	22	6	12	0	3	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0005	843	13	12	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0006	843	11	10	1	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0007	843	10	2	7	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0008	843	5	5	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0009	843	4	0	3	0	0	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0010	843	4	0	2	0	0	2	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0011	843	3	0	0	0	0	3	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0012	843	2	2	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0013	843	2	0	0	0	1	1	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0014	843	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0015	843	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0016	843	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0017	843	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0018	843	1	1	0	0	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP7A_chr22_42503344_42524796	0/0	c0019	843	1	0	0	1	0	0	copy fasta	RRP7A	chr22	42503344	42524796
RRP8_chr11_6590072_6608616	0/1	c0001	1371	319	30	64	171	16	37	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	1/0	c0002	1371	79	40	12	20	0	6	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0003	1371	17	0	7	7	0	3	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0004	1371	9	9	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0005	1371	6	6	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0006	1371	4	4	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0007	1371	3	3	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0008	1371	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0010	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0011	1371	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0012	1371	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0013	1371	1	0	0	0	1	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0014	1371	1	0	0	1	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0015	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0016	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0017	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0018	1371	1	0	1	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0019	1371	1	0	0	0	1	0	copy fasta	RRP8	chr11	6590072	6608616
RRP8_chr11_6590072_6608616	0/0	c0020	1371	1	1	0	0	0	0	copy fasta	RRP8	chr11	6590072	6608616
RRP9_chr3_51928429_51946904	1/1	c0001	1428	361	91	71	159	6	32	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0002	1428	3	0	0	3	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0003	1428	3	0	0	3	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0004	1428	2	0	2	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0005	1428	1	0	0	1	0	0	copy fasta	RRP9	chr3	51928429	51946904