JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RRP9_chr3_51928429_51946904	0/0	c0006	1428	1	0	0	0	0	1	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0007	1428	1	0	1	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0008	1428	1	0	0	0	0	1	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRP9_chr3_51928429_51946904	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	RRP9	chr3	51928429	51946904
RRS1_chr8_66424014_66435733	1/1	c0001	1098	291	74	48	118	15	34	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0002	1098	50	5	18	22	1	4	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0003	1098	41	0	7	33	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0004	1098	18	6	1	10	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0005	1098	17	6	2	9	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0006	1098	4	4	0	0	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0007	1098	3	3	0	0	0	0	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0008	1098	1	0	0	0	0	1	copy fasta	RRS1	chr8	66424014	66435733
RRS1_chr8_66424014_66435733	0/0	c0009	1098	1	0	0	0	0	1	copy fasta	RRS1	chr8	66424014	66435733
RS1_chrX_18634688_18677108	1/1	c0001	675	277	53	50	129	11	32	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0002	675	22	16	6	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0003	675	5	5	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0004	675	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0005	675	1	1	0	0	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0006	675	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RS1_chrX_18634688_18677108	0/0	c0007	675	1	0	0	1	0	0	copy fasta	RS1	chrX	18634688	18677108
RSAD1_chr17_50473860_50490974	1/0	c0001	1329	170	9	31	99	10	20	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/1	c0002	1329	88	16	23	31	5	12	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0003	1329	87	39	19	17	2	10	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0004	1329	20	18	2	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0005	1329	2	2	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0006	1329	2	0	0	2	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0007	1329	1	0	0	0	1	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0010	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0011	1329	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0012	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0013	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0014	1329	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0015	1329	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0016	1329	1	0	1	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0017	1329	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0018	1329	1	0	0	0	0	1	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	c0019	1329	1	0	0	0	0	1	copy fasta	RSAD1	chr17	50473860	50490974
RSAD2_chr2_6872777_6903239	1/1	c0001	1086	322	82	61	115	16	46	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0002	1086	5	5	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0003	1086	4	0	1	3	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0004	1086	3	3	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0005	1086	2	2	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0007	1086	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0008	1086	1	1	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	c0009	1086	1	0	0	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239