JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATF6_chr1_161761320_161969070	0/0	c0004	2013	70	1	10	51	5	3	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0005	2013	4	4	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0006	2013	3	3	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0007	2013	3	3	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0008	2013	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0009	2013	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0010	2013	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0011	2013	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	c0012	2013	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF7IP2_chr16_10381061_10488638	0/1	c0001	2046	142	24	24	72	6	15	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0002	2049	95	23	25	36	1	10	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	1/0	c0003	2049	56	3	15	24	3	10	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0004	2046	33	12	1	19	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0005	2049	12	12	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0006	2049	11	0	0	11	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0007	2049	4	4	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0008	2046	4	3	1	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0009	2046	3	0	0	3	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0010	2046	3	0	1	2	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0011	2046	2	2	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0012	2049	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0013	2049	1	0	0	0	1	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0014	2049	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0015	2049	1	0	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0016	2049	1	0	0	0	1	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0017	2049	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0018	2046	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0019	2046	1	0	1	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0020	2034	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0021	2046	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	c0022	2046	1	0	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP_chr12_14360682_14507930	0/0	c0001	3813	134	24	23	63	4	20	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/1	c0002	3813	74	10	8	42	5	8	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	1/0	c0003	3813	57	33	8	10	2	3	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0004	3813	15	0	14	0	1	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0005	3813	13	12	1	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0006	3813	13	0	0	10	0	3	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0007	3813	9	0	2	3	0	4	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0008	3813	8	2	5	0	1	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0009	3813	6	6	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0010	3813	3	0	0	0	3	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0011	3813	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0012	3813	2	0	2	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0013	3813	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0014	3813	2	0	0	2	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0015	3813	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0016	3813	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0017	3813	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0018	3813	1	0	1	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	c0019	3798	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930