JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSPH10B2_chr7_6749103_6803765	0/0	c0025	2613	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0026	2613	1	0	1	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0027	2611	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0028	2611	1	1	0	0	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0029	2613	1	0	0	1	0	0	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B2_chr7_6749103_6803765	0/0	c0030	2613	1	0	0	0	0	1	copy fasta	RSPH10B2	chr7	6749103	6803765
RSPH10B_chr7_5921136_5975689	0/0	c0001	2613	12	0	3	9	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0002	2613	11	3	2	1	4	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0003	2613	9	3	2	2	2	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0004	2613	9	1	5	1	2	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0005	2613	6	3	0	1	1	1	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0006	2613	5	1	4	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0007	2613	2	2	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0008	2613	2	2	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0009	2613	2	2	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0010	2613	2	0	2	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0011	2613	2	1	1	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0012	2613	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0013	2613	1	0	0	1	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0014	2613	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0015	2613	1	0	1	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0016	2613	1	0	0	0	1	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0017	2613	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0018	2613	1	1	0	0	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH10B_chr7_5921136_5975689	0/0	c0019	2613	1	0	0	1	0	0	copy fasta	RSPH10B	chr7	5921136	5975689
RSPH14_chr22_23054415_23146990	0/0	c0001	1047	161	49	31	54	11	16	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	1/1	c0002	1047	119	23	23	56	2	13	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0003	1047	14	3	2	2	1	6	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0004	1047	7	7	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0005	1047	2	2	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0006	1047	2	2	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0007	1047	1	0	0	1	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0008	1047	1	0	0	0	0	1	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0009	1047	1	0	1	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0011	1047	1	0	0	1	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0012	1047	1	1	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0013	1047	1	0	1	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0014	1047	1	1	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH14_chr22_23054415_23146990	0/0	c0015	1047	1	1	0	0	0	0	copy fasta	RSPH14	chr22	23054415	23146990
RSPH1_chr21_42467486_42501224	1/1	c0001	930	272	73	29	136	8	24	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0002	930	95	8	32	38	5	12	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0003	930	20	1	7	2	4	6	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0004	930	3	3	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0005	930	2	0	2	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0006	930	2	0	2	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0007	930	2	0	1	0	1	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0008	930	2	2	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0009	930	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0010	930	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224