JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSPH1_chr21_42467486_42501224	0/0	c0011	930	1	0	1	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0012	930	1	0	0	0	0	1	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0013	930	1	0	1	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0014	930	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0015	930	1	0	0	1	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0016	930	1	0	0	0	0	1	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0017	930	1	0	1	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH1_chr21_42467486_42501224	0/0	c0018	930	1	1	0	0	0	0	copy fasta	RSPH1	chr21	42467486	42501224
RSPH3_chr6_158967871_159005202	1/1	c0001	1257	164	33	38	75	2	14	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0002	1257	80	8	9	56	1	6	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0003	1257	14	14	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0004	1257	13	8	3	0	1	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0005	1257	6	6	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0006	1257	5	2	2	0	0	1	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0007	1257	3	2	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0008	1257	3	0	3	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0009	1257	2	1	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0010	1257	2	0	0	0	0	2	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0011	1257	2	2	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0012	1257	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0013	1257	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0014	1257	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0015	1257	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0016	1257	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0017	1257	1	0	1	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0018	1257	1	0	0	1	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH3_chr6_158967871_159005202	0/0	c0019	1257	1	1	0	0	0	0	copy fasta	RSPH3	chr6	158967871	159005202
RSPH4A_chr6_116611479_116637985	0/1	c0001	2151	123	49	10	47	4	12	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	1/0	c0002	2151	106	2	25	64	6	8	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0003	2151	94	6	12	60	7	9	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0004	2151	47	19	12	5	0	11	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0005	2151	12	11	1	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0006	2151	3	0	3	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0007	2151	3	0	3	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0008	2151	1	0	0	1	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0009	2151	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0010	2151	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0011	2151	1	0	0	0	0	1	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0012	2151	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0013	2151	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0014	2151	1	0	0	1	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0015	2151	1	0	0	0	0	1	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0016	2151	1	1	0	0	0	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH4A_chr6_116611479_116637985	0/0	c0017	2151	1	0	0	0	1	0	copy fasta	RSPH4A	chr6	116611479	116637985
RSPH6A_chr19_45790713_45820308	1/1	c0001	2154	244	51	53	92	14	32	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0002	2172	126	11	12	95	2	6	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0003	2154	13	13	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0004	2154	13	0	10	3	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0005	2172	4	0	0	4	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0006	2163	4	4	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308