JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSPH6A_chr19_45790713_45820308	0/0	c0007	2154	3	0	2	0	1	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0008	2154	3	3	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0009	2172	2	1	0	0	0	1	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0010	2172	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0011	2154	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0012	2154	1	0	0	0	0	1	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0013	2172	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0014	2172	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0015	2173	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0016	2173	1	0	0	1	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0017	2154	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0018	2154	1	0	0	0	1	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0019	2154	1	0	1	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0020	2154	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH6A_chr19_45790713_45820308	0/0	c0021	2172	1	1	0	0	0	0	copy fasta	RSPH6A	chr19	45790713	45820308
RSPH9_chr6_43640036_43677600	1/1	c0001	831	257	84	48	87	11	25	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0002	831	70	3	4	50	3	10	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0003	831	6	6	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0004	831	3	0	0	3	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0005	831	1	0	0	0	0	1	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0006	831	1	0	0	1	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0007	831	1	0	0	1	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0008	831	1	1	0	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0009	831	1	0	1	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPH9_chr6_43640036_43677600	0/0	c0010	831	1	0	1	0	0	0	copy fasta	RSPH9	chr6	43640036	43677600
RSPO1_chr1_37606350_37639892	1/1	c0001	792	387	94	65	174	14	38	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	c0002	792	29	0	4	18	2	5	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	c0003	795	3	2	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	c0004	792	1	0	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	c0005	792	1	0	1	0	0	0	copy fasta	RSPO1	chr1	37606350	37639892
RSPO1_chr1_37606350_37639892	0/0	c0006	792	1	0	0	0	0	1	copy fasta	RSPO1	chr1	37606350	37639892
RSPO2_chr8_107894316_108088620	1/1	c0001	732	143	62	19	40	0	20	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	c0002	732	95	2	31	40	8	14	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	c0003	732	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO2_chr8_107894316_108088620	0/0	c0004	732	1	1	0	0	0	0	copy fasta	RSPO2	chr8	107894316	108088620
RSPO3_chr6_127113671_127204481	0/1	c0001	819	165	57	33	54	6	14	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	1/0	c0002	819	143	25	27	74	6	10	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	c0003	819	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO3_chr6_127113671_127204481	0/0	c0004	819	1	1	0	0	0	0	copy fasta	RSPO3	chr6	127113671	127204481
RSPO4_chr20_953452_1007311	1/1	c0001	705	348	79	51	168	12	36	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0002	705	13	13	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0003	705	5	5	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0004	705	4	1	3	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0005	705	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0006	705	1	0	1	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0007	705	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0008	705	1	1	0	0	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0009	705	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPO4_chr20_953452_1007311	0/0	c0010	705	1	0	0	1	0	0	copy fasta	RSPO4	chr20	953452	1007311
RSPRY1_chr16_57181329_57245469	1/1	c0001	1731	352	82	62	160	14	32	copy fasta	RSPRY1	chr16	57181329	57245469