JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RSPRY1_chr16_57181329_57245469	0/0	c0002	1731	3	3	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	c0003	1731	2	2	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSPRY1_chr16_57181329_57245469	0/0	c0004	1731	1	1	0	0	0	0	copy fasta	RSPRY1	chr16	57181329	57245469
RSRC1_chr3_158105089_158550730	1/1	c0001	1005	271	75	47	105	12	30	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	c0002	1005	2	0	2	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	c0003	1005	1	1	0	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	c0004	1005	1	0	0	1	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC1_chr3_158105089_158550730	0/0	c0005	1005	1	0	1	0	0	0	copy fasta	RSRC1	chr3	158105089	158550730
RSRC2_chr12_122498454_122531936	1/1	c0001	1305	381	82	68	169	16	44	copy fasta	RSRC2	chr12	122498454	122531936
RSRC2_chr12_122498454_122531936	0/0	c0002	1305	1	0	0	1	0	0	copy fasta	RSRC2	chr12	122498454	122531936
RSRP1_chr1_25237249_25252454	1/0	c0001	873	285	75	44	121	13	31	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/1	c0002	873	35	1	19	3	4	7	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	c0003	873	17	14	3	0	0	0	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	c0004	873	5	0	2	0	1	2	copy fasta	RSRP1	chr1	25237249	25252454
RSRP1_chr1_25237249_25252454	0/0	c0005	873	2	0	0	0	0	2	copy fasta	RSRP1	chr1	25237249	25252454
RSU1_chr10_16585611_16822424	0/0	c0001	834	90	66	9	12	0	3	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	1/1	c0002	834	79	22	20	24	4	7	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	c0003	834	18	0	5	11	2	0	copy fasta	RSU1	chr10	16585611	16822424
RSU1_chr10_16585611_16822424	0/0	c0004	834	3	0	0	3	0	0	copy fasta	RSU1	chr10	16585611	16822424
RTBDN_chr19_12820482_12839579	1/0	c0001	690	394	78	66	195	15	39	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/1	c0002	690	28	14	5	7	1	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	c0003	690	3	3	0	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	c0004	690	2	0	0	0	0	2	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	c0005	690	1	0	0	0	0	1	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	c0006	690	1	0	1	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTBDN_chr19_12820482_12839579	0/0	c0007	690	1	1	0	0	0	0	copy fasta	RTBDN	chr19	12820482	12839579
RTCA_chr1_100261216_100297769	1/1	c0001	1101	287	84	50	111	10	30	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0002	1101	3	3	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0003	1101	2	0	1	0	1	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0004	1101	1	0	1	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0005	1101	1	0	0	0	1	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0006	1101	1	0	0	1	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCA_chr1_100261216_100297769	0/0	c0007	1101	1	1	0	0	0	0	copy fasta	RTCA	chr1	100261216	100297769
RTCB_chr22_32382582_32417247	1/0	c0001	1518	235	33	52	108	11	30	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0002	1518	102	10	5	78	0	9	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/1	c0003	1518	60	26	16	10	0	7	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0004	1518	23	11	4	1	3	4	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0005	1518	12	11	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0006	1518	3	2	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0007	1518	1	0	0	1	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0008	1518	1	0	1	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTCB_chr22_32382582_32417247	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	RTCB	chr22	32382582	32417247
RTEL1_chr20_63653312_63701245	0/0	c0001	3903	30	22	4	0	2	2	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0002	3903	4	0	2	0	1	1	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0003	3903	3	3	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	1/0	c0004	3903	3	0	0	1	1	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0005	3903	2	2	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0006	3903	2	2	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0007	3903	2	0	2	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0008	3903	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245