JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTEL1_chr20_63653312_63701245	0/0	c0009	3893	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0010	3903	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0011	3903	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0012	3903	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0013	3903	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0014	3903	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0015	3903	1	0	0	0	0	1	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0016	3903	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0017	3903	1	0	0	1	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0018	3903	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0019	3903	1	1	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/0	c0020	3903	1	0	1	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTEL1_chr20_63653312_63701245	0/1	c0021	3903	1	0	0	0	0	0	copy fasta	RTEL1	chr20	63653312	63701245
RTF1_chr15_41412095_41488563	1/1	c0001	2133	219	52	48	72	13	32	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0002	2133	2	2	0	0	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0003	2133	1	0	0	0	1	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0004	2133	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0005	2133	1	0	0	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0006	2133	1	0	0	0	0	1	copy fasta	RTF1	chr15	41412095	41488563
RTF1_chr15_41412095_41488563	0/0	c0007	2133	1	0	0	1	0	0	copy fasta	RTF1	chr15	41412095	41488563
RTF2_chr20_56463627_56524449	0/1	c0001	921	339	73	58	172	8	27	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	1/0	c0002	921	38	11	9	3	6	8	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0003	921	4	4	0	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0004	921	3	0	0	1	0	2	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0005	921	1	0	0	0	0	1	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0006	921	1	0	0	0	0	1	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0007	921	1	0	1	0	0	0	copy fasta	RTF2	chr20	56463627	56524449
RTF2_chr20_56463627_56524449	0/0	c0008	921	1	0	0	0	0	1	copy fasta	RTF2	chr20	56463627	56524449
RTKN2_chr10_62188086_62273844	0/0	c0001	1830	106	23	20	42	5	16	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/1	c0002	1824	42	27	6	3	2	3	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0003	1830	31	26	3	2	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0004	1830	30	1	2	18	1	8	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	1/0	c0005	1830	20	5	8	1	0	5	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0006	1830	12	1	2	7	2	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0007	1824	7	6	1	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0008	1830	7	3	0	2	0	2	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0009	1830	2	0	0	2	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0010	1824	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0011	1830	1	1	0	0	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0012	1830	1	0	0	1	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0013	1830	1	0	0	1	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN2_chr10_62188086_62273844	0/0	c0014	1830	1	0	0	1	0	0	copy fasta	RTKN2	chr10	62188086	62273844
RTKN_chr2_74420835_74446937	1/1	c0001	1692	361	81	66	170	14	28	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0002	1692	12	12	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0003	1692	2	0	0	2	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0004	1692	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0005	1692	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0006	1692	1	0	0	1	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0007	1692	1	0	0	0	0	1	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0008	1692	1	1	0	0	0	0	copy fasta	RTKN	chr2	74420835	74446937