JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTKN_chr2_74420835_74446937	0/0	c0009	1692	1	0	0	1	0	0	copy fasta	RTKN	chr2	74420835	74446937
RTKN_chr2_74420835_74446937	0/0	c0010	1692	1	0	0	0	0	1	copy fasta	RTKN	chr2	74420835	74446937
RTL10_chr22_19841146_19859874	1/1	c0001	1095	370	71	62	176	16	43	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0002	1095	13	0	3	9	0	1	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0003	1095	10	3	5	0	2	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0004	1095	8	8	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0005	1095	4	2	2	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0006	1095	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0007	1095	3	3	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0008	1095	3	0	0	3	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0009	1095	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL10_chr22_19841146_19859874	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	RTL10	chr22	19841146	19859874
RTL1_chr14_100874753_100908722	1/0	c0001	4077	147	17	28	78	4	19	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/1	c0002	4077	92	13	7	63	2	6	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0003	4077	35	28	5	1	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0004	4077	25	10	7	2	1	5	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0005	4080	19	0	9	0	4	6	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0006	4080	18	4	6	5	1	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0007	4077	17	0	0	17	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0008	4077	14	13	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0009	4077	8	0	5	1	1	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0010	4077	7	0	6	0	1	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0011	4080	5	0	3	0	2	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0012	4077	5	0	0	0	1	4	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0013	4077	4	4	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0014	4077	3	0	3	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0015	4077	3	0	0	3	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0016	4077	3	3	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0017	4080	2	0	0	0	0	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0018	4077	2	0	0	2	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0019	4080	2	0	1	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0020	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0021	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0022	4080	1	0	0	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0023	4080	1	0	0	0	1	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0024	4077	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0025	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0026	4077	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0027	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0028	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0029	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0030	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0031	4077	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0032	4077	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0033	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0034	4077	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0035	4077	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	c0036	4077	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722