JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTN4RL1_chr17_1929677_2030334	0/0	c0003	1326	24	0	1	21	0	2	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0004	1326	3	3	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0005	1326	2	0	1	0	1	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0006	1326	2	2	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0007	1326	1	0	0	0	0	1	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0008	1326	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0009	1326	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0010	1326	1	0	0	1	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	c0012	1326	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL2_chr11_57455528_57482534	1/1	c0001	1263	322	78	76	121	11	34	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0002	1263	19	18	1	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0003	1263	2	0	0	2	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0004	1263	2	2	0	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0005	1263	1	0	1	0	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0006	1263	1	0	0	0	1	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4RL2_chr11_57455528_57482534	0/0	c0007	1263	1	0	0	1	0	0	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4R_chr22_20236415_20273318	1/1	c0001	1422	380	90	72	156	16	44	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0002	1422	3	3	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0003	1422	2	2	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0004	1422	2	0	0	2	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0006	1422	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0008	1422	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	c0009	1422	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4_chr2_54967189_55055451	1/1	c0001	3579	243	59	31	109	13	29	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0002	3579	48	1	17	21	1	8	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0003	3579	9	9	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0004	3579	8	0	2	5	1	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0005	3579	8	8	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0006	3579	6	5	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0007	3579	5	4	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0008	3579	4	4	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0009	3579	2	0	0	2	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0010	3579	2	0	2	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0011	3579	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0012	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0013	3579	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0014	3579	1	0	0	0	0	1	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0015	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0016	3579	1	0	0	0	1	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0017	3579	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0018	3579	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0019	3579	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0020	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0021	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0022	3579	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0023	3579	1	0	0	1	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	c0024	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451