JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTN4_chr2_54967189_55055451	0/0	c0025	3579	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTP1_chr3_187192486_187206462	1/1	c0001	792	251	39	31	142	10	27	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0002	792	169	48	42	55	8	16	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0003	792	14	11	3	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0004	792	4	0	0	4	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0005	792	3	0	0	0	0	3	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0006	792	2	0	0	0	0	2	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0007	792	1	0	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0008	792	1	0	0	1	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP1_chr3_187192486_187206462	0/0	c0009	792	1	0	1	0	0	0	copy fasta	RTP1	chr3	187192486	187206462
RTP2_chr3_187693259_187707557	0/0	c0001	678	180	4	37	99	9	31	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	1/0	c0002	678	146	68	24	46	4	3	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/1	c0003	678	59	11	12	26	5	4	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0004	678	6	5	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0005	678	6	6	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0006	678	6	0	0	5	0	1	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0007	678	6	1	0	3	0	2	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0008	678	3	3	0	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0009	678	3	0	0	2	0	1	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0010	678	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0011	678	1	0	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0012	678	1	0	1	0	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0013	678	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0014	678	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0015	678	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP2_chr3_187693259_187707557	0/0	c0016	678	1	0	0	1	0	0	copy fasta	RTP2	chr3	187693259	187707557
RTP3_chr3_46492976_46505950	1/1	c0001	699	424	95	72	199	12	44	copy fasta	RTP3	chr3	46492976	46505950
RTP3_chr3_46492976_46505950	0/0	c0002	699	1	0	0	1	0	0	copy fasta	RTP3	chr3	46492976	46505950
RTP3_chr3_46492976_46505950	0/0	c0003	699	1	1	0	0	0	0	copy fasta	RTP3	chr3	46492976	46505950
RTP4_chr3_187363385_187377076	0/0	c0001	741	136	5	30	81	7	13	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0002	741	93	24	15	39	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0003	741	74	14	19	26	3	12	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0004	741	72	10	3	57	0	2	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	1/0	c0005	741	46	39	2	4	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0006	741	30	2	9	8	5	6	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0007	741	2	0	1	0	0	1	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/1	c0008	741	1	0	0	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0009	751	1	0	0	1	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP4_chr3_187363385_187377076	0/0	c0010	741	1	0	1	0	0	0	copy fasta	RTP4	chr3	187363385	187377076
RTP5_chr2_241864729_241878823	0/0	c0001	1719	107	44	20	25	4	14	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0002	1719	88	0	18	67	0	3	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/1	c0003	1719	82	10	20	26	7	18	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0004	1719	31	7	3	19	1	1	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0005	1719	13	12	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0006	1719	6	6	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0007	1719	4	3	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0008	1719	4	3	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0009	1719	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0010	1719	3	3	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0011	1719	3	0	0	3	0	0	copy fasta	RTP5	chr2	241864729	241878823