JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATF7IP_chr12_14360682_14507930	0/0	c0020	3813	1	1	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7_chr12_53507054_53631382	1/1	c0001	1452	310	77	61	119	10	41	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	c0002	1452	11	0	5	4	2	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	c0003	1452	6	6	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	c0004	1452	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	c0005	1452	1	0	0	0	0	1	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	c0006	1452	1	0	0	1	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATG101_chr12_52064978_52082495	1/1	c0001	657	365	81	58	176	10	38	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	c0002	645	28	13	6	0	4	5	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	c0003	657	1	0	0	0	0	1	copy fasta	ATG101	chr12	52064978	52082495
ATG10_chr5_81967023_82261133	1/1	c0001	663	96	60	18	0	6	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0002	663	69	17	17	18	7	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0003	663	32	7	5	10	0	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0004	663	16	1	5	7	0	3	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0005	663	9	0	3	3	1	2	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0006	663	2	2	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0007	663	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	c0008	663	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG12_chr5_115823200_115846565	1/1	c0001	423	396	91	73	171	16	43	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	c0002	423	4	0	2	1	0	1	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	c0003	423	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	c0004	423	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG13_chr11_46612553_46679518	1/1	c0001	1653	204	77	45	53	10	17	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0002	1653	7	6	1	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0003	1653	2	2	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0004	1653	2	0	0	0	0	2	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0005	1653	1	0	0	0	0	1	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0006	1653	1	0	0	1	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	c0007	1653	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG14_chr14_55361391_55416830	1/1	c0001	1479	258	60	45	124	8	19	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0002	1479	74	13	8	36	3	14	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0003	1479	11	11	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0004	1479	7	1	2	0	3	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0005	1479	3	0	0	0	0	3	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0006	1479	3	0	0	3	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0007	1479	2	1	1	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0008	1479	2	0	2	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0009	1479	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0010	1479	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0011	1479	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0012	1479	1	0	0	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0013	1479	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	c0014	1479	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG16L1_chr2_233246673_233300669	1/1	c0001	1824	223	57	30	105	8	21	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0002	1824	111	31	21	41	5	13	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0003	1824	6	0	0	6	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0004	1824	6	2	3	0	1	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0005	1824	4	4	0	0	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0006	1824	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	c0007	1824	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669