JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RTP5_chr2_241864729_241878823	0/0	c0012	1719	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0013	1719	2	0	0	2	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0014	1719	2	2	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0015	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0016	1719	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0017	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0018	1719	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0019	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0020	1719	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0021	1719	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0022	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0023	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0024	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0025	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0026	1719	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0027	1719	1	1	0	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0028	1719	1	0	0	1	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTP5_chr2_241864729_241878823	0/0	c0029	1719	1	0	1	0	0	0	copy fasta	RTP5	chr2	241864729	241878823
RTRAF_chr14_51984546_52015694	1/1	c0001	735	421	83	82	194	18	42	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	c0002	735	12	11	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	c0003	735	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	c0004	735	1	0	1	0	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTRAF_chr14_51984546_52015694	0/0	c0005	735	1	0	0	1	0	0	copy fasta	RTRAF	chr14	51984546	52015694
RTTN_chr18_69998031_70210687	0/1	c0001	6684	36	5	15	7	2	6	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0002	6684	25	23	2	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0003	6684	21	6	6	3	0	6	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	1/0	c0004	6681	20	17	2	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0005	6684	11	11	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0006	6684	9	2	2	1	0	4	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0007	6684	6	6	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0008	6684	4	3	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0009	6684	3	0	0	0	1	2	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0010	6684	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0011	6684	2	0	1	0	1	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0012	6684	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0013	6684	2	2	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0014	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0015	6684	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0016	6684	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0017	6684	1	0	0	0	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0018	6684	1	0	0	0	0	1	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0019	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0020	6684	1	0	0	1	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0021	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0022	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0023	6684	1	0	1	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0024	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0025	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RTTN_chr18_69998031_70210687	0/0	c0026	6684	1	1	0	0	0	0	copy fasta	RTTN	chr18	69998031	70210687
RUBCNL_chr13_46329681_46392252	0/0	c0001	1989	174	29	26	98	5	16	copy fasta	RUBCNL	chr13	46329681	46392252