JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RUBCNL_chr13_46329681_46392252	1/1	c0002	1989	149	34	30	63	5	15	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0003	1989	7	6	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0004	1989	6	5	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0005	1989	3	3	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0006	1989	3	0	0	0	0	3	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0007	1989	2	1	1	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0008	1989	2	0	1	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0009	1989	2	0	0	2	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0010	1989	2	2	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0011	1989	2	2	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0012	1989	1	0	0	1	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0013	1989	1	0	0	0	0	1	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0014	1989	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCNL_chr13_46329681_46392252	0/0	c0015	1989	1	1	0	0	0	0	copy fasta	RUBCNL	chr13	46329681	46392252
RUBCN_chr3_197663867_197741904	1/0	c0001	2919	98	20	24	27	7	19	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0002	2919	17	14	2	0	1	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0003	2919	14	13	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0004	2919	12	1	0	7	0	4	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/1	c0005	2919	10	8	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0006	2919	9	8	1	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0007	2919	7	5	2	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0008	2919	5	5	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0009	2919	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0010	2919	2	2	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0011	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0012	2919	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0013	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0014	2919	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0015	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0016	2919	1	0	0	0	0	1	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0017	2919	1	0	0	1	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0018	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0019	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUBCN_chr3_197663867_197741904	0/0	c0020	2919	1	1	0	0	0	0	copy fasta	RUBCN	chr3	197663867	197741904
RUFY1_chr5_179545554_179615012	1/0	c0001	2127	210	55	35	88	5	26	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0002	2127	92	22	23	28	6	13	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/1	c0003	2127	29	4	9	11	2	2	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0004	2127	22	1	4	12	1	4	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0005	2127	5	0	0	5	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0006	2127	4	4	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0007	2127	3	3	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0008	2127	2	2	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0009	2127	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0010	2127	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0011	2127	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0012	2127	1	0	0	0	0	1	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0013	2127	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0014	2127	1	1	0	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0015	2127	1	0	0	1	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY1_chr5_179545554_179615012	0/0	c0016	2127	1	0	0	1	0	0	copy fasta	RUFY1	chr5	179545554	179615012