JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RUFY1_chr5_179545554_179615012	0/0	c0017	2115	1	0	1	0	0	0	copy fasta	RUFY1	chr5	179545554	179615012
RUFY2_chr10_68338408_68412277	0/1	c0001	1821	197	64	32	66	8	26	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	1/0	c0002	1821	73	17	12	25	2	16	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	c0003	1821	3	0	0	3	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	c0004	1821	2	2	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY2_chr10_68338408_68412277	0/0	c0005	1821	1	1	0	0	0	0	copy fasta	RUFY2	chr10	68338408	68412277
RUFY3_chr4_70716964_70813619	1/1	c0001	1863	249	76	30	101	10	30	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	c0002	1863	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	c0003	1863	1	0	0	0	0	1	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	c0004	1863	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	c0005	1863	1	1	0	0	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY3_chr4_70716964_70813619	0/0	c0006	1863	1	0	0	1	0	0	copy fasta	RUFY3	chr4	70716964	70813619
RUFY4_chr2_218064253_218095584	1/0	c0001	1716	185	38	33	86	10	17	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0002	1716	92	2	29	41	3	17	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/1	c0003	1716	64	11	6	35	0	11	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0004	1716	11	10	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0005	1716	10	10	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0006	1716	4	4	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0007	1716	4	0	3	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0008	1716	3	3	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0009	1716	2	0	2	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0010	1716	2	2	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0011	1716	2	2	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0012	1716	2	0	0	0	1	1	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0013	1716	1	0	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0014	1716	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0015	1716	1	0	0	0	0	1	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0016	1716	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0017	1716	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0018	1716	1	0	0	0	0	1	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0019	1716	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0020	1716	1	0	1	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0021	1716	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0022	1716	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0023	1716	1	1	0	0	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0024	1716	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUFY4_chr2_218064253_218095584	0/0	c0025	1716	1	0	0	1	0	0	copy fasta	RUFY4	chr2	218064253	218095584
RUNDC1_chr17_42975565_43000142	0/1	c0001	1842	293	55	66	118	13	40	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0002	1842	15	15	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	1/0	c0003	1842	15	11	3	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0004	1842	3	2	1	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0005	1842	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0006	1842	1	0	0	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0007	1842	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0008	1842	1	0	0	0	1	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0009	1842	1	0	0	0	0	1	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC1_chr17_42975565_43000142	0/0	c0010	1842	1	1	0	0	0	0	copy fasta	RUNDC1	chr17	42975565	43000142
RUNDC3A_chr17_44303601_44323670	0/0	c0001	1341	294	64	44	156	6	24	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	1/1	c0002	1341	114	24	28	30	12	18	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	c0003	1341	1	0	1	0	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670