JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RUNDC3A_chr17_44303601_44323670	0/0	c0004	1341	1	0	0	1	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	c0005	1341	1	0	1	0	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3A_chr17_44303601_44323670	0/0	c0006	1341	1	0	0	1	0	0	copy fasta	RUNDC3A	chr17	44303601	44323670
RUNDC3B_chr7_87623398_87837296	1/1	c0001	1371	198	62	42	65	8	19	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	c0002	1371	3	0	0	3	0	0	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNDC3B_chr7_87623398_87837296	0/0	c0003	1371	1	0	0	0	0	1	copy fasta	RUNDC3B	chr7	87623398	87837296
RUNX1T1_chr8_91949972_92108385	1/1	c0001	1815	120	73	19	4	6	16	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	c0002	1815	7	7	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	c0003	1815	3	3	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	c0004	1815	1	1	0	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1T1_chr8_91949972_92108385	0/0	c0005	1815	1	0	1	0	0	0	copy fasta	RUNX1T1	chr8	91949972	92108385
RUNX1_chr21_34782801_35054302	1/1	c0001	1443	144	50	43	26	4	19	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0002	1443	18	10	4	2	0	2	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0003	1443	3	3	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0004	1443	1	0	0	0	0	1	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0005	1443	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0006	1443	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX1_chr21_34782801_35054302	0/0	c0008	1443	1	0	1	0	0	0	copy fasta	RUNX1	chr21	34782801	35054302
RUNX2_chr6_45323330_45556082	1/1	c0001	1566	158	73	28	36	6	13	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0002	1566	14	0	5	5	1	3	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0003	1548	2	0	2	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0004	1566	1	0	0	0	1	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0005	1566	1	0	1	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0006	1566	1	1	0	0	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX2_chr6_45323330_45556082	0/0	c0007	1566	1	0	0	1	0	0	copy fasta	RUNX2	chr6	45323330	45556082
RUNX3_chr1_24894511_24935276	1/1	c0001	1248	381	95	74	156	16	38	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	c0002	1248	2	0	0	0	0	2	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	c0003	1248	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	c0004	1248	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUNX3_chr1_24894511_24935276	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	RUNX3	chr1	24894511	24935276
RUSC1_chr1_155315894_155336114	1/1	c0001	2709	296	84	58	102	12	38	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0002	2709	6	5	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0003	2709	3	2	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0004	2709	3	0	0	2	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0005	2709	2	2	0	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0006	2709	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0007	2709	1	0	0	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0008	2709	1	0	0	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0009	2709	1	0	0	1	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0010	2709	1	1	0	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0011	2709	1	0	0	0	0	1	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0012	2709	1	0	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC1_chr1_155315894_155336114	0/0	c0013	2709	1	0	1	0	0	0	copy fasta	RUSC1	chr1	155315894	155336114
RUSC2_chr9_35485111_35566895	0/1	c0001	4551	283	44	58	136	10	34	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0002	4551	9	0	6	0	0	3	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0003	4551	7	7	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	1/0	c0004	4551	5	3	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0005	4551	3	2	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0006	4551	2	0	0	2	0	0	copy fasta	RUSC2	chr9	35485111	35566895