JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
RUSC2_chr9_35485111_35566895	0/0	c0007	4551	2	2	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0008	4551	2	0	0	0	0	2	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0009	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0010	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0011	4551	1	0	0	0	0	1	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0012	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0013	4551	1	0	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0014	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0015	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0016	4551	1	1	0	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSC2_chr9_35485111_35566895	0/0	c0017	4551	1	0	1	0	0	0	copy fasta	RUSC2	chr9	35485111	35566895
RUSF1_chr16_31484475_31513391	1/1	c0001	1407	350	66	56	170	16	40	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0002	1407	9	9	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0003	1407	4	4	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0004	1407	4	4	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0005	1407	3	3	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0006	1407	3	3	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0007	1407	2	2	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0008	1407	1	1	0	0	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0009	1407	1	0	0	1	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUSF1_chr16_31484475_31513391	0/0	c0010	1407	1	0	0	1	0	0	copy fasta	RUSF1	chr16	31484475	31513391
RUVBL1_chr3_128075810_128128812	1/1	c0001	1371	354	85	66	157	14	30	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	c0002	1371	2	2	0	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	c0003	1371	1	1	0	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	c0004	1371	1	0	1	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	c0005	1371	1	0	0	1	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL1_chr3_128075810_128128812	0/0	c0006	1371	1	0	1	0	0	0	copy fasta	RUVBL1	chr3	128075810	128128812
RUVBL2_chr19_48988887_49020970	1/0	c0001	1392	200	59	32	84	5	19	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/1	c0002	1392	160	14	37	71	8	29	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0003	1392	22	6	4	8	3	1	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0004	1392	9	8	1	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0005	1392	5	0	0	5	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0006	1392	3	3	0	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0007	1392	2	0	0	2	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0008	1392	2	1	0	1	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0009	1392	1	0	0	0	0	1	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0010	1392	1	0	0	1	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0011	1392	1	0	0	1	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0012	1392	1	0	1	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0013	1392	1	0	1	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0014	1392	1	0	0	1	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0015	1392	1	1	0	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0016	1392	1	1	0	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RUVBL2_chr19_48988887_49020970	0/0	c0017	1392	1	1	0	0	0	0	copy fasta	RUVBL2	chr19	48988887	49020970
RWDD1_chr6_116566504_116602675	1/1	c0001	732	377	88	56	171	18	42	copy fasta	RWDD1	chr6	116566504	116602675
RWDD1_chr6_116566504_116602675	0/0	c0002	732	1	0	0	1	0	0	copy fasta	RWDD1	chr6	116566504	116602675
RWDD2A_chr6_83188357_83203935	1/1	c0001	879	429	96	78	193	14	46	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	c0002	879	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	c0003	879	1	0	0	1	0	0	copy fasta	RWDD2A	chr6	83188357	83203935
RWDD2A_chr6_83188357_83203935	0/0	c0004	879	1	1	0	0	0	0	copy fasta	RWDD2A	chr6	83188357	83203935